Hb_001911_040

Information

Type -
Description -
Location Contig1911: 85323-89187
Sequence    

Annotation

kegg
ID rcu:RCOM_0455450
description hypothetical protein
nr
ID XP_012065202.1
description PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LH29
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19060: 85334-88934
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001911_040 0.0 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
2 Hb_011671_480 0.1065220847 - - conserved hypothetical protein [Ricinus communis]
3 Hb_009545_090 0.1129804849 - - hypothetical protein JCGZ_02186 [Jatropha curcas]
4 Hb_000538_240 0.1133519278 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
5 Hb_000743_030 0.1150347881 - - NmrA-like negative transcriptional regulator family protein [Theobroma cacao]
6 Hb_001829_040 0.116789833 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
7 Hb_000357_110 0.1179837542 - - PREDICTED: uncharacterized protein LOC105643970 isoform X2 [Jatropha curcas]
8 Hb_006643_020 0.1186469288 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
9 Hb_002631_280 0.1210720417 - - PREDICTED: ubiquitin isoform X2 [Eucalyptus grandis]
10 Hb_001221_220 0.1232596004 - - PREDICTED: deoxycytidylate deaminase isoform X1 [Jatropha curcas]
11 Hb_085972_010 0.1252630865 transcription factor TF Family: NAC NAC transcription factor 066 [Jatropha curcas]
12 Hb_002869_050 0.12880289 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
13 Hb_004883_050 0.1296539708 - - PREDICTED: probable UDP-arabinopyranose mutase 5 isoform X2 [Vitis vinifera]
14 Hb_006570_150 0.1303574587 - - PREDICTED: uncharacterized protein LOC105635342 isoform X1 [Jatropha curcas]
15 Hb_005463_050 0.1306476934 - - PREDICTED: uncharacterized protein LOC105632514 [Jatropha curcas]
16 Hb_014819_010 0.1310711313 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000096_120 0.1319416323 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
18 Hb_059480_010 0.1322006661 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
19 Hb_006117_060 0.1358488854 - - hypothetical protein CARUB_v10024452mg [Capsella rubella]
20 Hb_000022_050 0.1376027763 - - PREDICTED: retinol dehydrogenase 11-like isoform X2 [Glycine max]

Gene co-expression network

sample Hb_001911_040 Hb_001911_040 Hb_011671_480 Hb_011671_480 Hb_001911_040--Hb_011671_480 Hb_009545_090 Hb_009545_090 Hb_001911_040--Hb_009545_090 Hb_000538_240 Hb_000538_240 Hb_001911_040--Hb_000538_240 Hb_000743_030 Hb_000743_030 Hb_001911_040--Hb_000743_030 Hb_001829_040 Hb_001829_040 Hb_001911_040--Hb_001829_040 Hb_000357_110 Hb_000357_110 Hb_001911_040--Hb_000357_110 Hb_011671_480--Hb_001829_040 Hb_011671_480--Hb_000538_240 Hb_000260_720 Hb_000260_720 Hb_011671_480--Hb_000260_720 Hb_002983_080 Hb_002983_080 Hb_011671_480--Hb_002983_080 Hb_000331_090 Hb_000331_090 Hb_011671_480--Hb_000331_090 Hb_005015_080 Hb_005015_080 Hb_009545_090--Hb_005015_080 Hb_007943_050 Hb_007943_050 Hb_009545_090--Hb_007943_050 Hb_002232_480 Hb_002232_480 Hb_009545_090--Hb_002232_480 Hb_002869_050 Hb_002869_050 Hb_009545_090--Hb_002869_050 Hb_003925_040 Hb_003925_040 Hb_009545_090--Hb_003925_040 Hb_002553_040 Hb_002553_040 Hb_009545_090--Hb_002553_040 Hb_005463_050 Hb_005463_050 Hb_000538_240--Hb_005463_050 Hb_002232_040 Hb_002232_040 Hb_000538_240--Hb_002232_040 Hb_002631_280 Hb_002631_280 Hb_000538_240--Hb_002631_280 Hb_001221_220 Hb_001221_220 Hb_000538_240--Hb_001221_220 Hb_006570_150 Hb_006570_150 Hb_000743_030--Hb_006570_150 Hb_000743_030--Hb_001221_220 Hb_000743_030--Hb_000538_240 Hb_000743_030--Hb_002631_280 Hb_000422_030 Hb_000422_030 Hb_000743_030--Hb_000422_030 Hb_000022_050 Hb_000022_050 Hb_001829_040--Hb_000022_050 Hb_001829_040--Hb_002983_080 Hb_001829_040--Hb_000260_720 Hb_005686_120 Hb_005686_120 Hb_001829_040--Hb_005686_120 Hb_000261_230 Hb_000261_230 Hb_001829_040--Hb_000261_230 Hb_002205_110 Hb_002205_110 Hb_000357_110--Hb_002205_110 Hb_005306_190 Hb_005306_190 Hb_000357_110--Hb_005306_190 Hb_003389_040 Hb_003389_040 Hb_000357_110--Hb_003389_040 Hb_006816_350 Hb_006816_350 Hb_000357_110--Hb_006816_350 Hb_010997_080 Hb_010997_080 Hb_000357_110--Hb_010997_080 Hb_004586_140 Hb_004586_140 Hb_000357_110--Hb_004586_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.80493 11.853 9.72947 15.6895 4.26502 9.34131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.65942 10.6776 3.58826 3.76614 2.65728

CAGE analysis