Hb_000743_030

Information

Type -
Description -
Location Contig743: 39923-42909
Sequence    

Annotation

kegg
ID tcc:TCM_006861
description NmrA-like negative transcriptional regulator family protein
nr
ID XP_007042155.1
description NmrA-like negative transcriptional regulator family protein [Theobroma cacao]
swissprot
ID P52578
description Isoflavone reductase homolog OS=Solanum tuberosum PE=2 SV=1
trembl
ID A0A061E0W6
description NmrA-like negative transcriptional regulator family protein OS=Theobroma cacao GN=TCM_006861 PE=4 SV=1
Gene Ontology
ID GO:0005737
description isoflavone reductase homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56564: 40054-42682
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000743_030 0.0 - - NmrA-like negative transcriptional regulator family protein [Theobroma cacao]
2 Hb_001911_040 0.1150347881 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
3 Hb_006570_150 0.1267595034 - - PREDICTED: uncharacterized protein LOC105635342 isoform X1 [Jatropha curcas]
4 Hb_001221_220 0.1330419477 - - PREDICTED: deoxycytidylate deaminase isoform X1 [Jatropha curcas]
5 Hb_000538_240 0.1385574129 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
6 Hb_002631_280 0.1397399924 - - PREDICTED: ubiquitin isoform X2 [Eucalyptus grandis]
7 Hb_000422_030 0.1433694703 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
8 Hb_003567_030 0.1449491861 - - PREDICTED: nifU-like protein 4, mitochondrial [Jatropha curcas]
9 Hb_005463_050 0.1523299008 - - PREDICTED: uncharacterized protein LOC105632514 [Jatropha curcas]
10 Hb_000302_130 0.1554355187 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
11 Hb_000045_300 0.155850369 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier isoform X1 [Jatropha curcas]
12 Hb_153258_050 0.1569736356 - - PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]
13 Hb_006132_110 0.1572697067 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011671_480 0.1597452587 - - conserved hypothetical protein [Ricinus communis]
15 Hb_009545_090 0.160062124 - - hypothetical protein JCGZ_02186 [Jatropha curcas]
16 Hb_000003_540 0.1605013081 - - PREDICTED: homeobox-leucine zipper protein ATHB-15 [Jatropha curcas]
17 Hb_089140_120 0.1608447667 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
18 Hb_124373_010 0.1611016908 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
19 Hb_000696_160 0.1622829945 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
20 Hb_171900_060 0.1641569449 - - PREDICTED: uncharacterized protein LOC105643368 [Jatropha curcas]

Gene co-expression network

sample Hb_000743_030 Hb_000743_030 Hb_001911_040 Hb_001911_040 Hb_000743_030--Hb_001911_040 Hb_006570_150 Hb_006570_150 Hb_000743_030--Hb_006570_150 Hb_001221_220 Hb_001221_220 Hb_000743_030--Hb_001221_220 Hb_000538_240 Hb_000538_240 Hb_000743_030--Hb_000538_240 Hb_002631_280 Hb_002631_280 Hb_000743_030--Hb_002631_280 Hb_000422_030 Hb_000422_030 Hb_000743_030--Hb_000422_030 Hb_011671_480 Hb_011671_480 Hb_001911_040--Hb_011671_480 Hb_009545_090 Hb_009545_090 Hb_001911_040--Hb_009545_090 Hb_001911_040--Hb_000538_240 Hb_001829_040 Hb_001829_040 Hb_001911_040--Hb_001829_040 Hb_000357_110 Hb_000357_110 Hb_001911_040--Hb_000357_110 Hb_000115_080 Hb_000115_080 Hb_006570_150--Hb_000115_080 Hb_002893_040 Hb_002893_040 Hb_006570_150--Hb_002893_040 Hb_002965_040 Hb_002965_040 Hb_006570_150--Hb_002965_040 Hb_001258_100 Hb_001258_100 Hb_006570_150--Hb_001258_100 Hb_006570_150--Hb_009545_090 Hb_002092_120 Hb_002092_120 Hb_006570_150--Hb_002092_120 Hb_005867_090 Hb_005867_090 Hb_001221_220--Hb_005867_090 Hb_001221_220--Hb_000538_240 Hb_007943_050 Hb_007943_050 Hb_001221_220--Hb_007943_050 Hb_156635_010 Hb_156635_010 Hb_001221_220--Hb_156635_010 Hb_000733_200 Hb_000733_200 Hb_001221_220--Hb_000733_200 Hb_003567_030 Hb_003567_030 Hb_001221_220--Hb_003567_030 Hb_005463_050 Hb_005463_050 Hb_000538_240--Hb_005463_050 Hb_000538_240--Hb_011671_480 Hb_002232_040 Hb_002232_040 Hb_000538_240--Hb_002232_040 Hb_000538_240--Hb_002631_280 Hb_005784_040 Hb_005784_040 Hb_002631_280--Hb_005784_040 Hb_000003_540 Hb_000003_540 Hb_002631_280--Hb_000003_540 Hb_000384_070 Hb_000384_070 Hb_002631_280--Hb_000384_070 Hb_002631_280--Hb_011671_480 Hb_000086_170 Hb_000086_170 Hb_002631_280--Hb_000086_170 Hb_000649_230 Hb_000649_230 Hb_000422_030--Hb_000649_230 Hb_001269_640 Hb_001269_640 Hb_000422_030--Hb_001269_640 Hb_000690_190 Hb_000690_190 Hb_000422_030--Hb_000690_190 Hb_000422_030--Hb_156635_010 Hb_010315_060 Hb_010315_060 Hb_000422_030--Hb_010315_060 Hb_022132_050 Hb_022132_050 Hb_000422_030--Hb_022132_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.85118 7.66771 10.2906 14.4441 4.7835 4.84549
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.46118 11.2761 2.382 1.61693 1.94709

CAGE analysis