Hb_001221_220

Information

Type -
Description -
Location Contig1221: 155659-160680
Sequence    

Annotation

kegg
ID rcu:RCOM_1506180
description deoxycytidylate deaminase, putative (EC:3.5.4.12)
nr
ID XP_012079830.1
description PREDICTED: deoxycytidylate deaminase isoform X1 [Jatropha curcas]
swissprot
ID Q5RC69
description Deoxycytidylate deaminase OS=Pongo abelii GN=DCTD PE=2 SV=1
trembl
ID A0A067KGE4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11290 PE=4 SV=1
Gene Ontology
ID GO:0004132
description deoxycytidylate deaminase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06726: 155911-159895 , PASA_asmbl_06727: 155686-160758 , PASA_asmbl_06728: 160018-160383 , PASA_asmbl_06729: 158679-158995 , PASA_asmbl_06730: 158404-158931 , PASA_asmbl_06731: 158442-158626
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_220 0.0 - - PREDICTED: deoxycytidylate deaminase isoform X1 [Jatropha curcas]
2 Hb_005867_090 0.1080949359 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
3 Hb_000538_240 0.1126627589 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
4 Hb_007943_050 0.1167681898 - - peroxiredoxin, putative [Ricinus communis]
5 Hb_156635_010 0.1186503152 - - PREDICTED: autophagy-related protein 8f [Jatropha curcas]
6 Hb_000733_200 0.1202591071 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
7 Hb_003567_030 0.1212099442 - - PREDICTED: nifU-like protein 4, mitochondrial [Jatropha curcas]
8 Hb_010519_040 0.1224434254 - - PREDICTED: uncharacterized protein LOC105643567 [Jatropha curcas]
9 Hb_006132_110 0.1228077469 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004312_010 0.1228584661 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X2 [Jatropha curcas]
11 Hb_001911_040 0.1232596004 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
12 Hb_002631_280 0.1236371784 - - PREDICTED: ubiquitin isoform X2 [Eucalyptus grandis]
13 Hb_009545_090 0.1240563599 - - hypothetical protein JCGZ_02186 [Jatropha curcas]
14 Hb_006816_350 0.1241960708 - - PREDICTED: syntaxin-43 [Jatropha curcas]
15 Hb_000086_170 0.1242429815 - - PREDICTED: serine/threonine-protein kinase 19 [Jatropha curcas]
16 Hb_000357_110 0.1324663322 - - PREDICTED: uncharacterized protein LOC105643970 isoform X2 [Jatropha curcas]
17 Hb_000743_030 0.1330419477 - - NmrA-like negative transcriptional regulator family protein [Theobroma cacao]
18 Hb_011671_480 0.1337241377 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010534_010 0.1359326692 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
20 Hb_016467_010 0.1374706644 - - hypothetical protein POPTR_0004s18340g [Populus trichocarpa]

Gene co-expression network

sample Hb_001221_220 Hb_001221_220 Hb_005867_090 Hb_005867_090 Hb_001221_220--Hb_005867_090 Hb_000538_240 Hb_000538_240 Hb_001221_220--Hb_000538_240 Hb_007943_050 Hb_007943_050 Hb_001221_220--Hb_007943_050 Hb_156635_010 Hb_156635_010 Hb_001221_220--Hb_156635_010 Hb_000733_200 Hb_000733_200 Hb_001221_220--Hb_000733_200 Hb_003567_030 Hb_003567_030 Hb_001221_220--Hb_003567_030 Hb_005867_090--Hb_000733_200 Hb_007317_010 Hb_007317_010 Hb_005867_090--Hb_007317_010 Hb_164010_040 Hb_164010_040 Hb_005867_090--Hb_164010_040 Hb_000086_140 Hb_000086_140 Hb_005867_090--Hb_000086_140 Hb_001124_010 Hb_001124_010 Hb_005867_090--Hb_001124_010 Hb_001437_150 Hb_001437_150 Hb_005867_090--Hb_001437_150 Hb_005463_050 Hb_005463_050 Hb_000538_240--Hb_005463_050 Hb_011671_480 Hb_011671_480 Hb_000538_240--Hb_011671_480 Hb_002232_040 Hb_002232_040 Hb_000538_240--Hb_002232_040 Hb_002631_280 Hb_002631_280 Hb_000538_240--Hb_002631_280 Hb_001911_040 Hb_001911_040 Hb_000538_240--Hb_001911_040 Hb_000045_300 Hb_000045_300 Hb_007943_050--Hb_000045_300 Hb_009545_090 Hb_009545_090 Hb_007943_050--Hb_009545_090 Hb_005306_190 Hb_005306_190 Hb_007943_050--Hb_005306_190 Hb_000210_010 Hb_000210_010 Hb_007943_050--Hb_000210_010 Hb_095296_010 Hb_095296_010 Hb_007943_050--Hb_095296_010 Hb_010519_040 Hb_010519_040 Hb_007943_050--Hb_010519_040 Hb_007451_010 Hb_007451_010 Hb_156635_010--Hb_007451_010 Hb_000220_010 Hb_000220_010 Hb_156635_010--Hb_000220_010 Hb_014720_120 Hb_014720_120 Hb_156635_010--Hb_014720_120 Hb_002740_030 Hb_002740_030 Hb_156635_010--Hb_002740_030 Hb_003389_040 Hb_003389_040 Hb_156635_010--Hb_003389_040 Hb_007441_190 Hb_007441_190 Hb_156635_010--Hb_007441_190 Hb_000733_200--Hb_164010_040 Hb_004162_130 Hb_004162_130 Hb_000733_200--Hb_004162_130 Hb_000733_200--Hb_000086_140 Hb_017895_040 Hb_017895_040 Hb_000733_200--Hb_017895_040 Hb_000221_190 Hb_000221_190 Hb_000733_200--Hb_000221_190 Hb_002105_100 Hb_002105_100 Hb_003567_030--Hb_002105_100 Hb_171900_060 Hb_171900_060 Hb_003567_030--Hb_171900_060 Hb_002298_030 Hb_002298_030 Hb_003567_030--Hb_002298_030 Hb_000025_630 Hb_000025_630 Hb_003567_030--Hb_000025_630 Hb_000510_300 Hb_000510_300 Hb_003567_030--Hb_000510_300 Hb_012796_020 Hb_012796_020 Hb_003567_030--Hb_012796_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.7381 11.5463 13.0146 16.2067 7.7134 6.96056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.59436 14.3612 7.86712 3.32272 2.25237

CAGE analysis