Hb_005867_090

Information

Type -
Description -
Location Contig5867: 64355-70422
Sequence    

Annotation

kegg
ID rcu:RCOM_1039590
description hypothetical protein
nr
ID XP_012068020.1
description PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LBJ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15891 PE=4 SV=1
Gene Ontology
ID GO:0008168
description ribosomal rna small subunit methyltransferase a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50003: 64684-70410
cDNA
(Sanger)
(ID:Location)		 039_J24.ab1: 69019-70407

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005867_090 0.0 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
2 Hb_000733_200 0.077699164 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
3 Hb_007317_010 0.0921548132 - - conserved hypothetical protein [Ricinus communis]
4 Hb_164010_040 0.0963678502 - - serine/threonine protein kinase, putative [Ricinus communis]
5 Hb_000086_140 0.099838441 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
6 Hb_001124_010 0.1026924534 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X2 [Jatropha curcas]
7 Hb_001437_150 0.10397348 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
8 Hb_006573_040 0.1055111332 - - DNA binding protein, putative [Ricinus communis]
9 Hb_022250_060 0.1072290539 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1-like isoform X1 [Jatropha curcas]
10 Hb_001221_220 0.1080949359 - - PREDICTED: deoxycytidylate deaminase isoform X1 [Jatropha curcas]
11 Hb_005914_110 0.1083456824 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
12 Hb_004162_130 0.1111277395 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005245_100 0.1114614062 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic-like [Jatropha curcas]
14 Hb_016467_010 0.1120564171 - - hypothetical protein POPTR_0004s18340g [Populus trichocarpa]
15 Hb_000951_100 0.1122119399 - - PREDICTED: uncharacterized protein LOC103436565 isoform X1 [Malus domestica]
16 Hb_007943_050 0.1132925309 - - peroxiredoxin, putative [Ricinus communis]
17 Hb_002754_010 0.1140215466 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
18 Hb_062226_130 0.115714437 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
19 Hb_187679_010 0.1160672746 - - -
20 Hb_004312_010 0.117543816 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005867_090 Hb_005867_090 Hb_000733_200 Hb_000733_200 Hb_005867_090--Hb_000733_200 Hb_007317_010 Hb_007317_010 Hb_005867_090--Hb_007317_010 Hb_164010_040 Hb_164010_040 Hb_005867_090--Hb_164010_040 Hb_000086_140 Hb_000086_140 Hb_005867_090--Hb_000086_140 Hb_001124_010 Hb_001124_010 Hb_005867_090--Hb_001124_010 Hb_001437_150 Hb_001437_150 Hb_005867_090--Hb_001437_150 Hb_000733_200--Hb_164010_040 Hb_004162_130 Hb_004162_130 Hb_000733_200--Hb_004162_130 Hb_000733_200--Hb_000086_140 Hb_017895_040 Hb_017895_040 Hb_000733_200--Hb_017895_040 Hb_000221_190 Hb_000221_190 Hb_000733_200--Hb_000221_190 Hb_022250_060 Hb_022250_060 Hb_007317_010--Hb_022250_060 Hb_000926_090 Hb_000926_090 Hb_007317_010--Hb_000926_090 Hb_002217_020 Hb_002217_020 Hb_007317_010--Hb_002217_020 Hb_007317_010--Hb_000221_190 Hb_010578_080 Hb_010578_080 Hb_007317_010--Hb_010578_080 Hb_002754_010 Hb_002754_010 Hb_007317_010--Hb_002754_010 Hb_164010_040--Hb_002754_010 Hb_000869_080 Hb_000869_080 Hb_164010_040--Hb_000869_080 Hb_062226_130 Hb_062226_130 Hb_164010_040--Hb_062226_130 Hb_013358_040 Hb_013358_040 Hb_164010_040--Hb_013358_040 Hb_001278_100 Hb_001278_100 Hb_164010_040--Hb_001278_100 Hb_002073_200 Hb_002073_200 Hb_164010_040--Hb_002073_200 Hb_000608_050 Hb_000608_050 Hb_000086_140--Hb_000608_050 Hb_000365_270 Hb_000365_270 Hb_000086_140--Hb_000365_270 Hb_000086_140--Hb_017895_040 Hb_000086_140--Hb_000221_190 Hb_016467_010 Hb_016467_010 Hb_001124_010--Hb_016467_010 Hb_012395_170 Hb_012395_170 Hb_001124_010--Hb_012395_170 Hb_001761_120 Hb_001761_120 Hb_001124_010--Hb_001761_120 Hb_001124_010--Hb_002073_200 Hb_084247_010 Hb_084247_010 Hb_001124_010--Hb_084247_010 Hb_001124_010--Hb_164010_040 Hb_000856_380 Hb_000856_380 Hb_001437_150--Hb_000856_380 Hb_001123_130 Hb_001123_130 Hb_001437_150--Hb_001123_130 Hb_000527_060 Hb_000527_060 Hb_001437_150--Hb_000527_060 Hb_001437_150--Hb_004162_130 Hb_008566_050 Hb_008566_050 Hb_001437_150--Hb_008566_050 Hb_012286_030 Hb_012286_030 Hb_001437_150--Hb_012286_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.4079 6.08039 7.62602 7.87335 2.73569 3.28207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.62808 7.23198 7.29478 2.87179 2.1461

CAGE analysis