Hb_016467_010

Information

Type -
Description -
Location Contig16467: 3348-3668
Sequence    

Annotation

kegg
ID pop:POPTR_0004s18340g
description POPTRDRAFT_713387; hypothetical protein
nr
ID XP_002305529.1
description hypothetical protein POPTR_0004s18340g [Populus trichocarpa]
swissprot
ID Q5PNS9
description Probable protein phosphatase 2C 64 OS=Arabidopsis thaliana GN=At4g38520 PE=2 SV=1
trembl
ID B9H1K3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s18340g PE=3 SV=1
Gene Ontology
ID GO:0004722
description phosphatase 2c family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016467_010 0.0 - - hypothetical protein POPTR_0004s18340g [Populus trichocarpa]
2 Hb_001124_010 0.0698230614 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X2 [Jatropha curcas]
3 Hb_006132_110 0.0851808998 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004312_010 0.0852837459 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X2 [Jatropha curcas]
5 Hb_027428_010 0.0861011668 - - alpha-1,3-mannosyltransferase, putative [Ricinus communis]
6 Hb_000649_230 0.0910070493 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
7 Hb_000046_040 0.0955706181 - - conserved hypothetical protein [Ricinus communis]
8 Hb_164010_040 0.1010270561 - - serine/threonine protein kinase, putative [Ricinus communis]
9 Hb_002740_030 0.1015340579 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
10 Hb_002754_010 0.1034268255 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
11 Hb_002872_030 0.1066867157 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
12 Hb_000661_290 0.1076519299 - - PREDICTED: NAD(H) kinase 1-like isoform X1 [Populus euphratica]
13 Hb_002073_200 0.1078859887 - - Phosphatase 2A-2 [Theobroma cacao]
14 Hb_000086_170 0.1081052389 - - PREDICTED: serine/threonine-protein kinase 19 [Jatropha curcas]
15 Hb_000086_700 0.1082527792 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
16 Hb_003213_010 0.1084758953 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
17 Hb_000300_500 0.1085647088 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
18 Hb_084247_010 0.1089045419 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004096_180 0.1091026772 - - PREDICTED: 14-3-3-like protein A [Jatropha curcas]
20 Hb_004162_130 0.1091924227 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_016467_010 Hb_016467_010 Hb_001124_010 Hb_001124_010 Hb_016467_010--Hb_001124_010 Hb_006132_110 Hb_006132_110 Hb_016467_010--Hb_006132_110 Hb_004312_010 Hb_004312_010 Hb_016467_010--Hb_004312_010 Hb_027428_010 Hb_027428_010 Hb_016467_010--Hb_027428_010 Hb_000649_230 Hb_000649_230 Hb_016467_010--Hb_000649_230 Hb_000046_040 Hb_000046_040 Hb_016467_010--Hb_000046_040 Hb_012395_170 Hb_012395_170 Hb_001124_010--Hb_012395_170 Hb_001761_120 Hb_001761_120 Hb_001124_010--Hb_001761_120 Hb_002073_200 Hb_002073_200 Hb_001124_010--Hb_002073_200 Hb_084247_010 Hb_084247_010 Hb_001124_010--Hb_084247_010 Hb_164010_040 Hb_164010_040 Hb_001124_010--Hb_164010_040 Hb_006132_110--Hb_004312_010 Hb_000086_700 Hb_000086_700 Hb_006132_110--Hb_000086_700 Hb_003213_010 Hb_003213_010 Hb_006132_110--Hb_003213_010 Hb_000300_260 Hb_000300_260 Hb_006132_110--Hb_000300_260 Hb_006132_110--Hb_000649_230 Hb_004312_010--Hb_000300_260 Hb_000086_170 Hb_000086_170 Hb_004312_010--Hb_000086_170 Hb_000173_310 Hb_000173_310 Hb_004312_010--Hb_000173_310 Hb_006615_050 Hb_006615_050 Hb_004312_010--Hb_006615_050 Hb_004312_010--Hb_003213_010 Hb_002872_030 Hb_002872_030 Hb_027428_010--Hb_002872_030 Hb_073973_130 Hb_073973_130 Hb_027428_010--Hb_073973_130 Hb_005337_090 Hb_005337_090 Hb_027428_010--Hb_005337_090 Hb_006588_070 Hb_006588_070 Hb_027428_010--Hb_006588_070 Hb_000185_070 Hb_000185_070 Hb_027428_010--Hb_000185_070 Hb_010381_090 Hb_010381_090 Hb_027428_010--Hb_010381_090 Hb_000392_230 Hb_000392_230 Hb_000649_230--Hb_000392_230 Hb_010315_060 Hb_010315_060 Hb_000649_230--Hb_010315_060 Hb_000649_230--Hb_027428_010 Hb_000649_230--Hb_073973_130 Hb_022132_050 Hb_022132_050 Hb_000649_230--Hb_022132_050 Hb_000649_230--Hb_003213_010 Hb_011618_050 Hb_011618_050 Hb_000046_040--Hb_011618_050 Hb_000046_040--Hb_000649_230 Hb_010931_070 Hb_010931_070 Hb_000046_040--Hb_010931_070 Hb_001136_070 Hb_001136_070 Hb_000046_040--Hb_001136_070 Hb_000869_020 Hb_000869_020 Hb_000046_040--Hb_000869_020 Hb_000690_160 Hb_000690_160 Hb_000046_040--Hb_000690_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
95.2781 55.668 105.599 89.9463 57.4204 57.8478
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.8964 90.1687 76.399 32.0844 37.6194

CAGE analysis