Hb_000086_700

Information

Type -
Description -
Location Contig86: 608518-611020
Sequence    

Annotation

kegg
ID cic:CICLE_v10029087mg
description hypothetical protein
nr
ID XP_012069158.1
description PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
swissprot
ID P93211
description 14-3-3 protein 6 OS=Solanum lycopersicum GN=TFT6 PE=2 SV=2
trembl
ID A0A067L8U9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24924 PE=3 SV=1
Gene Ontology
ID GO:0019904
description 14-3-3-like protein 16r

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60787: 608732-610510 , PASA_asmbl_60788: 610511-610919
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_700 0.0 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
2 Hb_006132_110 0.0692723131 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004312_010 0.0952909049 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X2 [Jatropha curcas]
4 Hb_000300_260 0.1023382179 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
5 Hb_003213_010 0.1039068822 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
6 Hb_011671_310 0.1068065891 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
7 Hb_001723_150 0.1081639636 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
8 Hb_016467_010 0.1082527792 - - hypothetical protein POPTR_0004s18340g [Populus trichocarpa]
9 Hb_004096_180 0.1111672964 - - PREDICTED: 14-3-3-like protein A [Jatropha curcas]
10 Hb_001517_050 0.1155813394 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
11 Hb_002311_480 0.1163915949 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
12 Hb_003119_090 0.116918888 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
13 Hb_001077_070 0.1182916673 - - 60S ribosomal protein L9, putative [Ricinus communis]
14 Hb_006573_040 0.1193665819 - - DNA binding protein, putative [Ricinus communis]
15 Hb_000352_350 0.1200744942 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
16 Hb_000649_230 0.1210866884 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
17 Hb_000345_510 0.1214075798 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
18 Hb_002284_150 0.1214485476 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
19 Hb_027428_010 0.1216050865 - - alpha-1,3-mannosyltransferase, putative [Ricinus communis]
20 Hb_002272_050 0.1218362633 - - microsomal signal peptidase 23 kD subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_000086_700 Hb_000086_700 Hb_006132_110 Hb_006132_110 Hb_000086_700--Hb_006132_110 Hb_004312_010 Hb_004312_010 Hb_000086_700--Hb_004312_010 Hb_000300_260 Hb_000300_260 Hb_000086_700--Hb_000300_260 Hb_003213_010 Hb_003213_010 Hb_000086_700--Hb_003213_010 Hb_011671_310 Hb_011671_310 Hb_000086_700--Hb_011671_310 Hb_001723_150 Hb_001723_150 Hb_000086_700--Hb_001723_150 Hb_006132_110--Hb_004312_010 Hb_006132_110--Hb_003213_010 Hb_006132_110--Hb_000300_260 Hb_000649_230 Hb_000649_230 Hb_006132_110--Hb_000649_230 Hb_016467_010 Hb_016467_010 Hb_006132_110--Hb_016467_010 Hb_004312_010--Hb_000300_260 Hb_000086_170 Hb_000086_170 Hb_004312_010--Hb_000086_170 Hb_000173_310 Hb_000173_310 Hb_004312_010--Hb_000173_310 Hb_006615_050 Hb_006615_050 Hb_004312_010--Hb_006615_050 Hb_004312_010--Hb_003213_010 Hb_000300_260--Hb_000173_310 Hb_012565_070 Hb_012565_070 Hb_000300_260--Hb_012565_070 Hb_000300_260--Hb_003213_010 Hb_000300_260--Hb_001723_150 Hb_000300_260--Hb_000086_170 Hb_003213_010--Hb_000173_310 Hb_003213_010--Hb_001723_150 Hb_003213_010--Hb_000649_230 Hb_002272_050 Hb_002272_050 Hb_003213_010--Hb_002272_050 Hb_001500_120 Hb_001500_120 Hb_011671_310--Hb_001500_120 Hb_005977_030 Hb_005977_030 Hb_011671_310--Hb_005977_030 Hb_002311_480 Hb_002311_480 Hb_011671_310--Hb_002311_480 Hb_001005_020 Hb_001005_020 Hb_011671_310--Hb_001005_020 Hb_001761_120 Hb_001761_120 Hb_011671_310--Hb_001761_120 Hb_007290_030 Hb_007290_030 Hb_011671_310--Hb_007290_030 Hb_001723_150--Hb_000173_310 Hb_001723_150--Hb_002272_050 Hb_003861_060 Hb_003861_060 Hb_001723_150--Hb_003861_060 Hb_018790_020 Hb_018790_020 Hb_001723_150--Hb_018790_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
114.355 75.937 190.886 122.383 52.6088 62.4989
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
72.1927 104.479 71.6183 69.1231 30.2318

CAGE analysis