Hb_004312_010

Information

Type -
Description -
Location Contig4312: 20939-37872
Sequence    

Annotation

kegg
ID tcc:TCM_038772
description Kinase superfamily protein isoform 1
nr
ID XP_012084275.1
description PREDICTED: serine/threonine-protein kinase At5g01020 isoform X2 [Jatropha curcas]
swissprot
ID Q8GXZ3
description Serine/threonine-protein kinase At5g01020 OS=Arabidopsis thaliana GN=At5g01020 PE=1 SV=1
trembl
ID A0A067JUX6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19770 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase at5g01020

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42267: 22601-38670 , PASA_asmbl_42268: 35009-37841 , PASA_asmbl_42270: 30955-31323
cDNA
(Sanger)
(ID:Location)		 031_B05.ab1: 35009-37841

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004312_010 0.0 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X2 [Jatropha curcas]
2 Hb_006132_110 0.0558097265 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000300_260 0.0574924989 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
4 Hb_000086_170 0.0685024248 - - PREDICTED: serine/threonine-protein kinase 19 [Jatropha curcas]
5 Hb_000173_310 0.0729457788 - - PREDICTED: uncharacterized protein LOC105631893 isoform X1 [Jatropha curcas]
6 Hb_006615_050 0.0740075146 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
7 Hb_003213_010 0.0766588096 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
8 Hb_004807_020 0.083684666 - - PREDICTED: transcription initiation factor TFIID subunit 14b-like [Jatropha curcas]
9 Hb_001723_150 0.0848110568 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
10 Hb_016467_010 0.0852837459 - - hypothetical protein POPTR_0004s18340g [Populus trichocarpa]
11 Hb_000270_310 0.0909477875 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]
12 Hb_000649_230 0.0915293366 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
13 Hb_000733_200 0.0919171418 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
14 Hb_003760_030 0.0926189017 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
15 Hb_001124_010 0.0950301447 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X2 [Jatropha curcas]
16 Hb_002272_050 0.0950336472 - - microsomal signal peptidase 23 kD subunit, putative [Ricinus communis]
17 Hb_002946_190 0.0952402311 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
18 Hb_000086_700 0.0952909049 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
19 Hb_032202_100 0.0965642126 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
20 Hb_171900_090 0.0981426023 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004312_010 Hb_004312_010 Hb_006132_110 Hb_006132_110 Hb_004312_010--Hb_006132_110 Hb_000300_260 Hb_000300_260 Hb_004312_010--Hb_000300_260 Hb_000086_170 Hb_000086_170 Hb_004312_010--Hb_000086_170 Hb_000173_310 Hb_000173_310 Hb_004312_010--Hb_000173_310 Hb_006615_050 Hb_006615_050 Hb_004312_010--Hb_006615_050 Hb_003213_010 Hb_003213_010 Hb_004312_010--Hb_003213_010 Hb_000086_700 Hb_000086_700 Hb_006132_110--Hb_000086_700 Hb_006132_110--Hb_003213_010 Hb_006132_110--Hb_000300_260 Hb_000649_230 Hb_000649_230 Hb_006132_110--Hb_000649_230 Hb_016467_010 Hb_016467_010 Hb_006132_110--Hb_016467_010 Hb_000300_260--Hb_000173_310 Hb_012565_070 Hb_012565_070 Hb_000300_260--Hb_012565_070 Hb_000300_260--Hb_003213_010 Hb_001723_150 Hb_001723_150 Hb_000300_260--Hb_001723_150 Hb_000300_260--Hb_000086_170 Hb_000270_310 Hb_000270_310 Hb_000086_170--Hb_000270_310 Hb_161574_020 Hb_161574_020 Hb_000086_170--Hb_161574_020 Hb_014720_120 Hb_014720_120 Hb_000086_170--Hb_014720_120 Hb_000336_210 Hb_000336_210 Hb_000086_170--Hb_000336_210 Hb_002272_050 Hb_002272_050 Hb_000086_170--Hb_002272_050 Hb_000173_310--Hb_003213_010 Hb_000173_310--Hb_001723_150 Hb_002572_020 Hb_002572_020 Hb_000173_310--Hb_002572_020 Hb_002413_010 Hb_002413_010 Hb_000173_310--Hb_002413_010 Hb_004807_020 Hb_004807_020 Hb_006615_050--Hb_004807_020 Hb_001077_070 Hb_001077_070 Hb_006615_050--Hb_001077_070 Hb_171900_090 Hb_171900_090 Hb_006615_050--Hb_171900_090 Hb_007007_040 Hb_007007_040 Hb_006615_050--Hb_007007_040 Hb_000789_320 Hb_000789_320 Hb_006615_050--Hb_000789_320 Hb_003213_010--Hb_001723_150 Hb_003213_010--Hb_000649_230 Hb_003213_010--Hb_002272_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.6712 15.9578 35.1105 23.8073 15.7742 12.8827
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8496 25.9618 14.8625 10.023 11.1649

CAGE analysis