Hb_006132_110

Information

Type -
Description -
Location Contig6132: 80695-82658
Sequence    

Annotation

kegg
ID rcu:RCOM_1615840
description hypothetical protein
nr
ID XP_002511879.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RDU0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1615840 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51121: 80723-82646 , PASA_asmbl_51122: 81427-81686
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006132_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004312_010 0.0558097265 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X2 [Jatropha curcas]
3 Hb_000086_700 0.0692723131 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
4 Hb_003213_010 0.0781511815 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
5 Hb_000300_260 0.0784589118 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
6 Hb_000649_230 0.0850250429 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
7 Hb_016467_010 0.0851808998 - - hypothetical protein POPTR_0004s18340g [Populus trichocarpa]
8 Hb_000086_170 0.0876514257 - - PREDICTED: serine/threonine-protein kinase 19 [Jatropha curcas]
9 Hb_000345_510 0.094608998 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
10 Hb_000173_310 0.0955557015 - - PREDICTED: uncharacterized protein LOC105631893 isoform X1 [Jatropha curcas]
11 Hb_001723_150 0.0973368823 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
12 Hb_010315_060 0.0988786008 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
13 Hb_002272_050 0.1008612802 - - microsomal signal peptidase 23 kD subunit, putative [Ricinus communis]
14 Hb_006615_050 0.1022131858 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
15 Hb_027428_010 0.103782637 - - alpha-1,3-mannosyltransferase, putative [Ricinus communis]
16 Hb_004096_180 0.1047861192 - - PREDICTED: 14-3-3-like protein A [Jatropha curcas]
17 Hb_000297_160 0.1049373596 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
18 Hb_000392_230 0.1055688545 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000422_030 0.1060059039 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
20 Hb_073973_130 0.1060836324 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_006132_110 Hb_006132_110 Hb_004312_010 Hb_004312_010 Hb_006132_110--Hb_004312_010 Hb_000086_700 Hb_000086_700 Hb_006132_110--Hb_000086_700 Hb_003213_010 Hb_003213_010 Hb_006132_110--Hb_003213_010 Hb_000300_260 Hb_000300_260 Hb_006132_110--Hb_000300_260 Hb_000649_230 Hb_000649_230 Hb_006132_110--Hb_000649_230 Hb_016467_010 Hb_016467_010 Hb_006132_110--Hb_016467_010 Hb_004312_010--Hb_000300_260 Hb_000086_170 Hb_000086_170 Hb_004312_010--Hb_000086_170 Hb_000173_310 Hb_000173_310 Hb_004312_010--Hb_000173_310 Hb_006615_050 Hb_006615_050 Hb_004312_010--Hb_006615_050 Hb_004312_010--Hb_003213_010 Hb_000086_700--Hb_004312_010 Hb_000086_700--Hb_000300_260 Hb_000086_700--Hb_003213_010 Hb_011671_310 Hb_011671_310 Hb_000086_700--Hb_011671_310 Hb_001723_150 Hb_001723_150 Hb_000086_700--Hb_001723_150 Hb_003213_010--Hb_000173_310 Hb_003213_010--Hb_001723_150 Hb_003213_010--Hb_000300_260 Hb_003213_010--Hb_000649_230 Hb_002272_050 Hb_002272_050 Hb_003213_010--Hb_002272_050 Hb_000300_260--Hb_000173_310 Hb_012565_070 Hb_012565_070 Hb_000300_260--Hb_012565_070 Hb_000300_260--Hb_001723_150 Hb_000300_260--Hb_000086_170 Hb_000392_230 Hb_000392_230 Hb_000649_230--Hb_000392_230 Hb_010315_060 Hb_010315_060 Hb_000649_230--Hb_010315_060 Hb_027428_010 Hb_027428_010 Hb_000649_230--Hb_027428_010 Hb_073973_130 Hb_073973_130 Hb_000649_230--Hb_073973_130 Hb_022132_050 Hb_022132_050 Hb_000649_230--Hb_022132_050 Hb_001124_010 Hb_001124_010 Hb_016467_010--Hb_001124_010 Hb_016467_010--Hb_004312_010 Hb_016467_010--Hb_027428_010 Hb_016467_010--Hb_000649_230 Hb_000046_040 Hb_000046_040 Hb_016467_010--Hb_000046_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.6213 20.0661 44.0401 31.9593 20.7031 15.6747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.9066 32.1098 16.4817 13.6095 9.86544

CAGE analysis