Hb_000045_300

Information

Type -
Description -
Location Contig45: 283155-287631
Sequence    

Annotation

kegg
ID rcu:RCOM_0591310
description peroxisomal membrane protein pmp34, putative
nr
ID XP_012087878.1
description PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier isoform X1 [Jatropha curcas]
swissprot
ID O04200
description Peroxisomal nicotinamide adenine dinucleotide carrier OS=Arabidopsis thaliana GN=PXN PE=1 SV=1
trembl
ID A0A067LJJ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01325 PE=3 SV=1
Gene Ontology
ID GO:0016020
description peroxisomal nicotinamide adenine dinucleotide carrier

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43149: 285811-286989 , PASA_asmbl_43151: 284730-285953 , PASA_asmbl_43152: 283282-287347
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000045_300 0.0 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier isoform X1 [Jatropha curcas]
2 Hb_007943_050 0.0882005483 - - peroxiredoxin, putative [Ricinus communis]
3 Hb_000327_380 0.092379381 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
4 Hb_000327_230 0.0960166321 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
5 Hb_000733_200 0.109492002 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
6 Hb_003362_030 0.1121093091 - - hypothetical protein POPTR_0017s08440g [Populus trichocarpa]
7 Hb_012565_070 0.114883603 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
8 Hb_017987_050 0.1164319508 - - PREDICTED: branched-chain-amino-acid aminotransferase 5, chloroplastic-like [Jatropha curcas]
9 Hb_000099_150 0.1164339545 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
10 Hb_005365_030 0.1193789788 - - hypothetical protein POPTR_0002s24010g [Populus trichocarpa]
11 Hb_110560_010 0.1202062086 - - ATP binding protein, putative [Ricinus communis]
12 Hb_000221_190 0.1216668547 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
13 Hb_000115_220 0.1224506527 - - hypothetical protein CISIN_1g0379742mg, partial [Citrus sinensis]
14 Hb_000032_380 0.1224771471 - - conserved hypothetical protein [Ricinus communis]
15 Hb_171900_060 0.1225157974 - - PREDICTED: uncharacterized protein LOC105643368 [Jatropha curcas]
16 Hb_000331_470 0.1225682764 - - PREDICTED: uncharacterized protein LOC105136689 [Populus euphratica]
17 Hb_000367_160 0.1228084728 - - PREDICTED: SNAP25 homologous protein SNAP33 [Populus euphratica]
18 Hb_021068_040 0.1229813658 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
19 Hb_003389_040 0.1250002229 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
20 Hb_000365_270 0.1250384302 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]

Gene co-expression network

sample Hb_000045_300 Hb_000045_300 Hb_007943_050 Hb_007943_050 Hb_000045_300--Hb_007943_050 Hb_000327_380 Hb_000327_380 Hb_000045_300--Hb_000327_380 Hb_000327_230 Hb_000327_230 Hb_000045_300--Hb_000327_230 Hb_000733_200 Hb_000733_200 Hb_000045_300--Hb_000733_200 Hb_003362_030 Hb_003362_030 Hb_000045_300--Hb_003362_030 Hb_012565_070 Hb_012565_070 Hb_000045_300--Hb_012565_070 Hb_009545_090 Hb_009545_090 Hb_007943_050--Hb_009545_090 Hb_005306_190 Hb_005306_190 Hb_007943_050--Hb_005306_190 Hb_000210_010 Hb_000210_010 Hb_007943_050--Hb_000210_010 Hb_095296_010 Hb_095296_010 Hb_007943_050--Hb_095296_010 Hb_010519_040 Hb_010519_040 Hb_007943_050--Hb_010519_040 Hb_000009_290 Hb_000009_290 Hb_000327_380--Hb_000009_290 Hb_000805_240 Hb_000805_240 Hb_000327_380--Hb_000805_240 Hb_010560_030 Hb_010560_030 Hb_000327_380--Hb_010560_030 Hb_000327_380--Hb_000327_230 Hb_000327_380--Hb_003362_030 Hb_001863_430 Hb_001863_430 Hb_000327_230--Hb_001863_430 Hb_000136_260 Hb_000136_260 Hb_000327_230--Hb_000136_260 Hb_000001_060 Hb_000001_060 Hb_000327_230--Hb_000001_060 Hb_000099_150 Hb_000099_150 Hb_000327_230--Hb_000099_150 Hb_000005_090 Hb_000005_090 Hb_000327_230--Hb_000005_090 Hb_001016_150 Hb_001016_150 Hb_000327_230--Hb_001016_150 Hb_164010_040 Hb_164010_040 Hb_000733_200--Hb_164010_040 Hb_004162_130 Hb_004162_130 Hb_000733_200--Hb_004162_130 Hb_000086_140 Hb_000086_140 Hb_000733_200--Hb_000086_140 Hb_005867_090 Hb_005867_090 Hb_000733_200--Hb_005867_090 Hb_017895_040 Hb_017895_040 Hb_000733_200--Hb_017895_040 Hb_000221_190 Hb_000221_190 Hb_000733_200--Hb_000221_190 Hb_000457_180 Hb_000457_180 Hb_003362_030--Hb_000457_180 Hb_001341_150 Hb_001341_150 Hb_003362_030--Hb_001341_150 Hb_011609_020 Hb_011609_020 Hb_003362_030--Hb_011609_020 Hb_148121_040 Hb_148121_040 Hb_003362_030--Hb_148121_040 Hb_008071_020 Hb_008071_020 Hb_003362_030--Hb_008071_020 Hb_021068_040 Hb_021068_040 Hb_003362_030--Hb_021068_040 Hb_000300_260 Hb_000300_260 Hb_012565_070--Hb_000300_260 Hb_003848_040 Hb_003848_040 Hb_012565_070--Hb_003848_040 Hb_012565_070--Hb_000457_180 Hb_001863_380 Hb_001863_380 Hb_012565_070--Hb_001863_380 Hb_002307_180 Hb_002307_180 Hb_012565_070--Hb_002307_180 Hb_001105_170 Hb_001105_170 Hb_012565_070--Hb_001105_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9152 22.8839 24.5627 25.8218 8.45506 11.7749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.8871 35.6774 15.5536 12.5455 6.75864

CAGE analysis