Hb_002307_180

Information

Type -
Description -
Location Contig2307: 129746-135973
Sequence    

Annotation

kegg
ID rcu:RCOM_0909310
description hypothetical protein
nr
ID XP_012069753.1
description PREDICTED: rRNA-processing protein EFG1 isoform X2 [Jatropha curcas]
swissprot
ID Q09867
description rRNA-processing protein efg1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=efg1 PE=3 SV=2
trembl
ID A0A067L706
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02268 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24252: 129772-130521
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002307_180 0.0 - - PREDICTED: rRNA-processing protein EFG1 isoform X2 [Jatropha curcas]
2 Hb_000690_190 0.0754102712 - - 40S ribosomal protein S7, putative [Ricinus communis]
3 Hb_000599_260 0.0778258424 - - Vacuolar protein sorting-associated protein 2 like 3 [Glycine soja]
4 Hb_012565_070 0.0780014198 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
5 Hb_000270_310 0.0835767318 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]
6 Hb_000270_470 0.0881141454 transcription factor TF Family: E2F-DP PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial [Jatropha curcas]
7 Hb_032202_100 0.0888215353 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
8 Hb_002946_190 0.0890056181 - - PREDICTED: nudix hydrolase 26, chloroplastic [Jatropha curcas]
9 Hb_000373_050 0.0891489624 - - PREDICTED: protein WHI3 [Jatropha curcas]
10 Hb_001804_080 0.091871487 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
11 Hb_008225_090 0.0941947415 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
12 Hb_002171_060 0.0945551439 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001931_010 0.0947238066 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
14 Hb_001863_380 0.0976153453 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
15 Hb_000300_260 0.0987406655 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
16 Hb_161574_020 0.0989103275 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
17 Hb_015299_030 0.0992938451 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
18 Hb_000185_050 0.1009249402 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
19 Hb_000946_090 0.1020173763 - - PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
20 Hb_000633_020 0.1022127368 - - PREDICTED: uncharacterized protein LOC105630002 [Jatropha curcas]

Gene co-expression network

sample Hb_002307_180 Hb_002307_180 Hb_000690_190 Hb_000690_190 Hb_002307_180--Hb_000690_190 Hb_000599_260 Hb_000599_260 Hb_002307_180--Hb_000599_260 Hb_012565_070 Hb_012565_070 Hb_002307_180--Hb_012565_070 Hb_000270_310 Hb_000270_310 Hb_002307_180--Hb_000270_310 Hb_000270_470 Hb_000270_470 Hb_002307_180--Hb_000270_470 Hb_032202_100 Hb_032202_100 Hb_002307_180--Hb_032202_100 Hb_002946_190 Hb_002946_190 Hb_000690_190--Hb_002946_190 Hb_000690_190--Hb_000599_260 Hb_007878_010 Hb_007878_010 Hb_000690_190--Hb_007878_010 Hb_161574_020 Hb_161574_020 Hb_000690_190--Hb_161574_020 Hb_002171_060 Hb_002171_060 Hb_000690_190--Hb_002171_060 Hb_001931_010 Hb_001931_010 Hb_000599_260--Hb_001931_010 Hb_000599_260--Hb_002171_060 Hb_000505_130 Hb_000505_130 Hb_000599_260--Hb_000505_130 Hb_001472_100 Hb_001472_100 Hb_000599_260--Hb_001472_100 Hb_000599_260--Hb_012565_070 Hb_000300_260 Hb_000300_260 Hb_012565_070--Hb_000300_260 Hb_003848_040 Hb_003848_040 Hb_012565_070--Hb_003848_040 Hb_000457_180 Hb_000457_180 Hb_012565_070--Hb_000457_180 Hb_001863_380 Hb_001863_380 Hb_012565_070--Hb_001863_380 Hb_001105_170 Hb_001105_170 Hb_012565_070--Hb_001105_170 Hb_000270_310--Hb_161574_020 Hb_001278_100 Hb_001278_100 Hb_000270_310--Hb_001278_100 Hb_000086_170 Hb_000086_170 Hb_000270_310--Hb_000086_170 Hb_002936_010 Hb_002936_010 Hb_000270_310--Hb_002936_010 Hb_164010_040 Hb_164010_040 Hb_000270_310--Hb_164010_040 Hb_000270_310--Hb_007878_010 Hb_001025_090 Hb_001025_090 Hb_000270_470--Hb_001025_090 Hb_008225_090 Hb_008225_090 Hb_000270_470--Hb_008225_090 Hb_000789_320 Hb_000789_320 Hb_000270_470--Hb_000789_320 Hb_111036_010 Hb_111036_010 Hb_000270_470--Hb_111036_010 Hb_171900_090 Hb_171900_090 Hb_000270_470--Hb_171900_090 Hb_000176_020 Hb_000176_020 Hb_000270_470--Hb_000176_020 Hb_000130_270 Hb_000130_270 Hb_032202_100--Hb_000130_270 Hb_000926_200 Hb_000926_200 Hb_032202_100--Hb_000926_200 Hb_155215_020 Hb_155215_020 Hb_032202_100--Hb_155215_020 Hb_000035_160 Hb_000035_160 Hb_032202_100--Hb_000035_160 Hb_000946_090 Hb_000946_090 Hb_032202_100--Hb_000946_090 Hb_032202_100--Hb_161574_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.0604 20.6701 44.1231 27.2705 15.8671 21.2472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.3656 57.4011 17.3063 15.9256 19.7328

CAGE analysis