Hb_000035_160

Information

Type -
Description -
Location Contig35: 218516-239222
Sequence    

Annotation

kegg
ID rcu:RCOM_0920950
description DNA binding protein, putative
nr
ID XP_012076436.1
description PREDICTED: formin-like protein 18 [Jatropha curcas]
swissprot
ID Q6ZCX3
description Formin-like protein 6 OS=Oryza sativa subsp. japonica GN=FH6 PE=2 SV=2
trembl
ID A0A067KES4
description Formin-like protein OS=Jatropha curcas GN=JCGZ_07089 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_160 0.0 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
2 Hb_000926_200 0.0696206548 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
3 Hb_032202_100 0.0778797081 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
4 Hb_003207_180 0.0865965585 - - PREDICTED: uncharacterized protein LOC105645887 isoform X2 [Jatropha curcas]
5 Hb_157023_020 0.0887652491 - - nucleic acid binding protein, putative [Ricinus communis]
6 Hb_000116_490 0.0943276881 - - PREDICTED: WD repeat-containing protein 55 homolog [Jatropha curcas]
7 Hb_000603_160 0.0950955149 - - PREDICTED: fatty-acid-binding protein 2 [Jatropha curcas]
8 Hb_002572_020 0.0954104288 transcription factor TF Family: SBP hypothetical protein POPTR_0005s28010g [Populus trichocarpa]
9 Hb_040819_010 0.0961603164 - - protein phosphatase 2c, putative [Ricinus communis]
10 Hb_002272_270 0.0963919469 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
11 Hb_002316_140 0.0967928119 - - PREDICTED: rac-like GTP-binding protein 3 [Populus euphratica]
12 Hb_000130_270 0.0979722846 - - PREDICTED: malate dehydrogenase, mitochondrial [Jatropha curcas]
13 Hb_005288_130 0.0987348605 - - protein with unknown function [Ricinus communis]
14 Hb_014497_100 0.0990970572 - - PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
15 Hb_000080_130 0.0996794706 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
16 Hb_000840_200 0.0998954946 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
17 Hb_000599_260 0.1007135517 - - Vacuolar protein sorting-associated protein 2 like 3 [Glycine soja]
18 Hb_053709_050 0.1031033892 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_001821_110 0.10412457 - - PREDICTED: ubiquinol oxidase, mitochondrial [Jatropha curcas]
20 Hb_001728_040 0.1062128401 - - Aconitase/3-isopropylmalate dehydratase protein [Theobroma cacao]

Gene co-expression network

sample Hb_000035_160 Hb_000035_160 Hb_000926_200 Hb_000926_200 Hb_000035_160--Hb_000926_200 Hb_032202_100 Hb_032202_100 Hb_000035_160--Hb_032202_100 Hb_003207_180 Hb_003207_180 Hb_000035_160--Hb_003207_180 Hb_157023_020 Hb_157023_020 Hb_000035_160--Hb_157023_020 Hb_000116_490 Hb_000116_490 Hb_000035_160--Hb_000116_490 Hb_000603_160 Hb_000603_160 Hb_000035_160--Hb_000603_160 Hb_040819_010 Hb_040819_010 Hb_000926_200--Hb_040819_010 Hb_000926_200--Hb_032202_100 Hb_004984_030 Hb_004984_030 Hb_000926_200--Hb_004984_030 Hb_053709_050 Hb_053709_050 Hb_000926_200--Hb_053709_050 Hb_002316_140 Hb_002316_140 Hb_000926_200--Hb_002316_140 Hb_000130_270 Hb_000130_270 Hb_032202_100--Hb_000130_270 Hb_155215_020 Hb_155215_020 Hb_032202_100--Hb_155215_020 Hb_000946_090 Hb_000946_090 Hb_032202_100--Hb_000946_090 Hb_161574_020 Hb_161574_020 Hb_032202_100--Hb_161574_020 Hb_001472_100 Hb_001472_100 Hb_003207_180--Hb_001472_100 Hb_000260_630 Hb_000260_630 Hb_003207_180--Hb_000260_630 Hb_000300_260 Hb_000300_260 Hb_003207_180--Hb_000300_260 Hb_003848_040 Hb_003848_040 Hb_003207_180--Hb_003848_040 Hb_000069_720 Hb_000069_720 Hb_003207_180--Hb_000069_720 Hb_003207_180--Hb_000130_270 Hb_000840_200 Hb_000840_200 Hb_157023_020--Hb_000840_200 Hb_002572_020 Hb_002572_020 Hb_157023_020--Hb_002572_020 Hb_073973_090 Hb_073973_090 Hb_157023_020--Hb_073973_090 Hb_000375_390 Hb_000375_390 Hb_157023_020--Hb_000375_390 Hb_000023_260 Hb_000023_260 Hb_157023_020--Hb_000023_260 Hb_157023_020--Hb_000603_160 Hb_001804_080 Hb_001804_080 Hb_000116_490--Hb_001804_080 Hb_005288_130 Hb_005288_130 Hb_000116_490--Hb_005288_130 Hb_000116_490--Hb_032202_100 Hb_000116_490--Hb_000946_090 Hb_002303_020 Hb_002303_020 Hb_000116_490--Hb_002303_020 Hb_000270_310 Hb_000270_310 Hb_000116_490--Hb_000270_310 Hb_005563_070 Hb_005563_070 Hb_000603_160--Hb_005563_070 Hb_000603_160--Hb_002572_020 Hb_189216_010 Hb_189216_010 Hb_000603_160--Hb_189216_010 Hb_000365_270 Hb_000365_270 Hb_000603_160--Hb_000365_270 Hb_001141_420 Hb_001141_420 Hb_000603_160--Hb_001141_420 Hb_004607_090 Hb_004607_090 Hb_000603_160--Hb_004607_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0529111 0.122556 0.283897 0.238805 0.0877445 0.11404
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.156731 0.237193 0.0909886 0.135345 0.162417

CAGE analysis