Hb_002303_020

Information

Type -
Description -
Location Contig2303: 38690-49439
Sequence    

Annotation

kegg
ID tcc:TCM_019889
description Lysyl-tRNA synthetase 1 isoform 1
nr
ID XP_012478334.1
description PREDICTED: lysine--tRNA ligase-like [Gossypium raimondii]
swissprot
ID Q9ZPI1
description Lysine--tRNA ligase OS=Arabidopsis thaliana GN=At3g11710 PE=1 SV=1
trembl
ID A0A0D2NBF5
description Gossypium raimondii chromosome 5, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_005G123900 PE=4 SV=1
Gene Ontology
ID GO:0005737
description lysine--trna ligase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24199: 39187-48916
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002303_020 0.0 - - PREDICTED: lysine--tRNA ligase-like [Gossypium raimondii]
2 Hb_000840_200 0.0595315932 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
3 Hb_002534_100 0.0647743273 - - PREDICTED: malate dehydrogenase, chloroplastic [Jatropha curcas]
4 Hb_004712_210 0.0647927664 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM50-like [Jatropha curcas]
5 Hb_001728_040 0.0679018082 - - Aconitase/3-isopropylmalate dehydratase protein [Theobroma cacao]
6 Hb_044653_040 0.078861963 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
7 Hb_015675_040 0.0828990499 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
8 Hb_000663_060 0.085223598 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
9 Hb_000116_490 0.0862028501 - - PREDICTED: WD repeat-containing protein 55 homolog [Jatropha curcas]
10 Hb_000699_150 0.0887082145 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
11 Hb_002272_270 0.0887167626 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
12 Hb_007472_070 0.0894160068 - - cir, putative [Ricinus communis]
13 Hb_000080_130 0.0901964753 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
14 Hb_062226_060 0.091643996 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
15 Hb_004781_010 0.0919581551 - - PREDICTED: potassium transporter 11-like [Populus euphratica]
16 Hb_000292_100 0.0923540585 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
17 Hb_000365_230 0.0923727011 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
18 Hb_012022_040 0.0931058392 - - Protein SIS1, putative [Ricinus communis]
19 Hb_001269_130 0.0934165329 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
20 Hb_023001_040 0.0937061362 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_002303_020 Hb_002303_020 Hb_000840_200 Hb_000840_200 Hb_002303_020--Hb_000840_200 Hb_002534_100 Hb_002534_100 Hb_002303_020--Hb_002534_100 Hb_004712_210 Hb_004712_210 Hb_002303_020--Hb_004712_210 Hb_001728_040 Hb_001728_040 Hb_002303_020--Hb_001728_040 Hb_044653_040 Hb_044653_040 Hb_002303_020--Hb_044653_040 Hb_015675_040 Hb_015675_040 Hb_002303_020--Hb_015675_040 Hb_002272_270 Hb_002272_270 Hb_000840_200--Hb_002272_270 Hb_003878_090 Hb_003878_090 Hb_000840_200--Hb_003878_090 Hb_157023_020 Hb_157023_020 Hb_000840_200--Hb_157023_020 Hb_000069_720 Hb_000069_720 Hb_000840_200--Hb_000069_720 Hb_000840_200--Hb_015675_040 Hb_002534_100--Hb_004712_210 Hb_002534_100--Hb_044653_040 Hb_010578_080 Hb_010578_080 Hb_002534_100--Hb_010578_080 Hb_000292_100 Hb_000292_100 Hb_002534_100--Hb_000292_100 Hb_062226_130 Hb_062226_130 Hb_002534_100--Hb_062226_130 Hb_004712_210--Hb_010578_080 Hb_004712_210--Hb_044653_040 Hb_009296_070 Hb_009296_070 Hb_004712_210--Hb_009296_070 Hb_002173_070 Hb_002173_070 Hb_004712_210--Hb_002173_070 Hb_000847_060 Hb_000847_060 Hb_001728_040--Hb_000847_060 Hb_005653_070 Hb_005653_070 Hb_001728_040--Hb_005653_070 Hb_000723_230 Hb_000723_230 Hb_001728_040--Hb_000723_230 Hb_015057_020 Hb_015057_020 Hb_001728_040--Hb_015057_020 Hb_003376_180 Hb_003376_180 Hb_001728_040--Hb_003376_180 Hb_000505_130 Hb_000505_130 Hb_044653_040--Hb_000505_130 Hb_005843_140 Hb_005843_140 Hb_044653_040--Hb_005843_140 Hb_003669_020 Hb_003669_020 Hb_044653_040--Hb_003669_020 Hb_000310_020 Hb_000310_020 Hb_044653_040--Hb_000310_020 Hb_000080_130 Hb_000080_130 Hb_015675_040--Hb_000080_130 Hb_158530_020 Hb_158530_020 Hb_015675_040--Hb_158530_020 Hb_005976_080 Hb_005976_080 Hb_015675_040--Hb_005976_080 Hb_011224_050 Hb_011224_050 Hb_015675_040--Hb_011224_050 Hb_000185_220 Hb_000185_220 Hb_015675_040--Hb_000185_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.10971 13.8056 17.796 19.2563 7.34963 9.68173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.91 25.3343 11.9493 17.1638 19.1094

CAGE analysis