Hb_009296_070

Information

Type -
Description -
Location Contig9296: 81998-87876
Sequence    

Annotation

kegg
ID rcu:RCOM_0243690
description cak1, putative (EC:2.7.11.23)
nr
ID XP_012072561.1
description PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
swissprot
ID P29620
description Cyclin-dependent kinase D-1 OS=Oryza sativa subsp. japonica GN=CDKD-1 PE=1 SV=1
trembl
ID A0A067L1C4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05353 PE=4 SV=1
Gene Ontology
ID GO:0005524
description cyclin-dependent kinase d-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009296_070 0.0 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
2 Hb_005588_080 0.0680874189 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
3 Hb_003861_060 0.0709104868 - - PREDICTED: treacle protein [Jatropha curcas]
4 Hb_010578_080 0.0725025814 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]
5 Hb_062226_130 0.0738216338 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
6 Hb_003878_090 0.0773409541 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
7 Hb_000365_230 0.0774631257 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
8 Hb_001699_220 0.0786790842 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH121-like [Jatropha curcas]
9 Hb_003428_010 0.0798766197 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
10 Hb_006132_090 0.0799850936 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
11 Hb_003098_070 0.0805641238 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
12 Hb_001623_270 0.0818120748 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
13 Hb_000176_020 0.0824765433 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]
14 Hb_000230_400 0.0830516979 - - PREDICTED: protein ABCI12, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_003363_070 0.0831616338 - - -
16 Hb_000699_150 0.0831893298 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
17 Hb_000392_420 0.0836148244 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
18 Hb_002534_100 0.0846124955 - - PREDICTED: malate dehydrogenase, chloroplastic [Jatropha curcas]
19 Hb_000292_100 0.0846951999 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
20 Hb_021374_030 0.0852020497 - - hypothetical protein RCOM_0351490 [Ricinus communis]

Gene co-expression network

sample Hb_009296_070 Hb_009296_070 Hb_005588_080 Hb_005588_080 Hb_009296_070--Hb_005588_080 Hb_003861_060 Hb_003861_060 Hb_009296_070--Hb_003861_060 Hb_010578_080 Hb_010578_080 Hb_009296_070--Hb_010578_080 Hb_062226_130 Hb_062226_130 Hb_009296_070--Hb_062226_130 Hb_003878_090 Hb_003878_090 Hb_009296_070--Hb_003878_090 Hb_000365_230 Hb_000365_230 Hb_009296_070--Hb_000365_230 Hb_000230_400 Hb_000230_400 Hb_005588_080--Hb_000230_400 Hb_000059_380 Hb_000059_380 Hb_005588_080--Hb_000059_380 Hb_003428_010 Hb_003428_010 Hb_005588_080--Hb_003428_010 Hb_003513_010 Hb_003513_010 Hb_005588_080--Hb_003513_010 Hb_005588_080--Hb_003861_060 Hb_007007_120 Hb_007007_120 Hb_005588_080--Hb_007007_120 Hb_014834_150 Hb_014834_150 Hb_003861_060--Hb_014834_150 Hb_004052_080 Hb_004052_080 Hb_003861_060--Hb_004052_080 Hb_003861_060--Hb_003428_010 Hb_003861_060--Hb_003513_010 Hb_164390_010 Hb_164390_010 Hb_003861_060--Hb_164390_010 Hb_000392_420 Hb_000392_420 Hb_003861_060--Hb_000392_420 Hb_010578_080--Hb_062226_130 Hb_004712_210 Hb_004712_210 Hb_010578_080--Hb_004712_210 Hb_010578_080--Hb_000392_420 Hb_002534_100 Hb_002534_100 Hb_010578_080--Hb_002534_100 Hb_010578_080--Hb_000365_230 Hb_000738_020 Hb_000738_020 Hb_062226_130--Hb_000738_020 Hb_005162_090 Hb_005162_090 Hb_062226_130--Hb_005162_090 Hb_062226_130--Hb_000365_230 Hb_164010_040 Hb_164010_040 Hb_062226_130--Hb_164010_040 Hb_003849_110 Hb_003849_110 Hb_062226_130--Hb_003849_110 Hb_062226_130--Hb_003428_010 Hb_000976_120 Hb_000976_120 Hb_003878_090--Hb_000976_120 Hb_003878_090--Hb_003861_060 Hb_000069_720 Hb_000069_720 Hb_003878_090--Hb_000069_720 Hb_003878_090--Hb_014834_150 Hb_000840_200 Hb_000840_200 Hb_003878_090--Hb_000840_200 Hb_133702_010 Hb_133702_010 Hb_003878_090--Hb_133702_010 Hb_000365_230--Hb_164390_010 Hb_004109_320 Hb_004109_320 Hb_000365_230--Hb_004109_320 Hb_007894_150 Hb_007894_150 Hb_000365_230--Hb_007894_150 Hb_003098_070 Hb_003098_070 Hb_000365_230--Hb_003098_070 Hb_000778_010 Hb_000778_010 Hb_000365_230--Hb_000778_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.07108 6.38381 9.69713 6.85943 3.09028 3.8427
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.63787 7.94283 5.887 6.18681 8.59972

CAGE analysis