Hb_002232_040

Information

Type -
Description -
Location Contig2232: 17526-18995
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23104: 17635-24565 , PASA_asmbl_23105: 18473-18705
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_040 0.0 - - -
2 Hb_000096_170 0.0987910325 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Jatropha curcas]
3 Hb_156635_010 0.0990747651 - - PREDICTED: autophagy-related protein 8f [Jatropha curcas]
4 Hb_124953_020 0.1072805895 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
5 Hb_000538_240 0.1078887881 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
6 Hb_002105_100 0.1100754265 - - protein with unknown function [Ricinus communis]
7 Hb_001016_150 0.1187089394 - - Rop1 [Hevea brasiliensis]
8 Hb_002171_060 0.1194833915 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007451_010 0.1197043361 - - PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Jatropha curcas]
10 Hb_002078_140 0.1205116951 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
11 Hb_171900_060 0.1208388294 - - PREDICTED: uncharacterized protein LOC105643368 [Jatropha curcas]
12 Hb_000327_230 0.1244457405 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
13 Hb_000696_160 0.1245419393 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
14 Hb_010907_030 0.1262233584 - - -
15 Hb_000260_550 0.126679846 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
16 Hb_005365_030 0.127584158 - - hypothetical protein POPTR_0002s24010g [Populus trichocarpa]
17 Hb_000562_030 0.1288883295 - - conserved hypothetical protein [Ricinus communis]
18 Hb_027472_040 0.1305700654 - - SKP1 [Hevea brasiliensis]
19 Hb_000610_050 0.132210649 - - skp1, putative [Ricinus communis]
20 Hb_000236_390 0.1331404669 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]

Gene co-expression network

sample Hb_002232_040 Hb_002232_040 Hb_000096_170 Hb_000096_170 Hb_002232_040--Hb_000096_170 Hb_156635_010 Hb_156635_010 Hb_002232_040--Hb_156635_010 Hb_124953_020 Hb_124953_020 Hb_002232_040--Hb_124953_020 Hb_000538_240 Hb_000538_240 Hb_002232_040--Hb_000538_240 Hb_002105_100 Hb_002105_100 Hb_002232_040--Hb_002105_100 Hb_001016_150 Hb_001016_150 Hb_002232_040--Hb_001016_150 Hb_000260_550 Hb_000260_550 Hb_000096_170--Hb_000260_550 Hb_007044_130 Hb_007044_130 Hb_000096_170--Hb_007044_130 Hb_000395_290 Hb_000395_290 Hb_000096_170--Hb_000395_290 Hb_022425_040 Hb_022425_040 Hb_000096_170--Hb_022425_040 Hb_004223_040 Hb_004223_040 Hb_000096_170--Hb_004223_040 Hb_007451_010 Hb_007451_010 Hb_156635_010--Hb_007451_010 Hb_000220_010 Hb_000220_010 Hb_156635_010--Hb_000220_010 Hb_014720_120 Hb_014720_120 Hb_156635_010--Hb_014720_120 Hb_002740_030 Hb_002740_030 Hb_156635_010--Hb_002740_030 Hb_003389_040 Hb_003389_040 Hb_156635_010--Hb_003389_040 Hb_007441_190 Hb_007441_190 Hb_156635_010--Hb_007441_190 Hb_124953_020--Hb_001016_150 Hb_002078_140 Hb_002078_140 Hb_124953_020--Hb_002078_140 Hb_005365_030 Hb_005365_030 Hb_124953_020--Hb_005365_030 Hb_004800_060 Hb_004800_060 Hb_124953_020--Hb_004800_060 Hb_001863_430 Hb_001863_430 Hb_124953_020--Hb_001863_430 Hb_002192_010 Hb_002192_010 Hb_124953_020--Hb_002192_010 Hb_005463_050 Hb_005463_050 Hb_000538_240--Hb_005463_050 Hb_011671_480 Hb_011671_480 Hb_000538_240--Hb_011671_480 Hb_002631_280 Hb_002631_280 Hb_000538_240--Hb_002631_280 Hb_001221_220 Hb_001221_220 Hb_000538_240--Hb_001221_220 Hb_001911_040 Hb_001911_040 Hb_000538_240--Hb_001911_040 Hb_000002_380 Hb_000002_380 Hb_002105_100--Hb_000002_380 Hb_154948_040 Hb_154948_040 Hb_002105_100--Hb_154948_040 Hb_000005_090 Hb_000005_090 Hb_002105_100--Hb_000005_090 Hb_000805_240 Hb_000805_240 Hb_002105_100--Hb_000805_240 Hb_000390_300 Hb_000390_300 Hb_002105_100--Hb_000390_300 Hb_002171_060 Hb_002171_060 Hb_002105_100--Hb_002171_060 Hb_001016_150--Hb_001863_430 Hb_001016_150--Hb_002078_140 Hb_001341_150 Hb_001341_150 Hb_001016_150--Hb_001341_150 Hb_002811_170 Hb_002811_170 Hb_001016_150--Hb_002811_170 Hb_000506_070 Hb_000506_070 Hb_001016_150--Hb_000506_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3478 9.92432 12.7951 18.2018 9.20792 9.21041
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.5427 29.0086 6.23429 8.27978 3.03415

CAGE analysis