Hb_000096_170

Information

Type -
Description -
Location Contig96: 159594-160118
Sequence    

Annotation

kegg
ID pop:POPTR_0004s23300g
description hypothetical protein
nr
ID XP_012079421.1
description PREDICTED: 50S ribosomal protein L12, cyanelle-like [Jatropha curcas]
swissprot
ID Q1XDE8
description 50S ribosomal protein L12, chloroplastic OS=Pyropia yezoensis GN=rpl12 PE=3 SV=1
trembl
ID A0A067KAN8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12544 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000096_170 0.0 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Jatropha curcas]
2 Hb_000260_550 0.0615347651 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
3 Hb_007044_130 0.0853849809 - - PREDICTED: cyclin-B1-2 [Jatropha curcas]
4 Hb_000395_290 0.0939400523 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-8 [Jatropha curcas]
5 Hb_022425_040 0.096189572 - - PREDICTED: probable RNA methyltransferase At5g51130 [Jatropha curcas]
6 Hb_004223_040 0.0976129793 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
7 Hb_002232_040 0.0987910325 - - -
8 Hb_002518_080 0.0995214668 - - PREDICTED: uncharacterized protein LOC105639837 [Jatropha curcas]
9 Hb_124953_020 0.1017525384 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
10 Hb_000506_070 0.1034410057 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
11 Hb_004453_170 0.1043434035 - - hypothetical protein POPTR_0018s01370g [Populus trichocarpa]
12 Hb_003641_020 0.1050582493 - - hypothetical protein POPTR_0006s13960g [Populus trichocarpa]
13 Hb_000115_220 0.1067844597 - - hypothetical protein CISIN_1g0379742mg, partial [Citrus sinensis]
14 Hb_000062_650 0.1069501019 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
15 Hb_000264_210 0.1082185142 - - tfiih, polypeptide, putative [Ricinus communis]
16 Hb_000236_390 0.1090129023 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
17 Hb_001016_150 0.1093830533 - - Rop1 [Hevea brasiliensis]
18 Hb_012368_020 0.1094246204 - - PREDICTED: uncharacterized protein LOC105650964 [Jatropha curcas]
19 Hb_000127_180 0.1096927829 - - 40S ribosomal protein S18, putative [Ricinus communis]
20 Hb_000035_370 0.1098291342 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000096_170 Hb_000096_170 Hb_000260_550 Hb_000260_550 Hb_000096_170--Hb_000260_550 Hb_007044_130 Hb_007044_130 Hb_000096_170--Hb_007044_130 Hb_000395_290 Hb_000395_290 Hb_000096_170--Hb_000395_290 Hb_022425_040 Hb_022425_040 Hb_000096_170--Hb_022425_040 Hb_004223_040 Hb_004223_040 Hb_000096_170--Hb_004223_040 Hb_002232_040 Hb_002232_040 Hb_000096_170--Hb_002232_040 Hb_000260_550--Hb_007044_130 Hb_004453_170 Hb_004453_170 Hb_000260_550--Hb_004453_170 Hb_000127_180 Hb_000127_180 Hb_000260_550--Hb_000127_180 Hb_002518_080 Hb_002518_080 Hb_000260_550--Hb_002518_080 Hb_124953_020 Hb_124953_020 Hb_000260_550--Hb_124953_020 Hb_002783_270 Hb_002783_270 Hb_007044_130--Hb_002783_270 Hb_001141_140 Hb_001141_140 Hb_007044_130--Hb_001141_140 Hb_000062_650 Hb_000062_650 Hb_007044_130--Hb_000062_650 Hb_003894_070 Hb_003894_070 Hb_007044_130--Hb_003894_070 Hb_006925_040 Hb_006925_040 Hb_007044_130--Hb_006925_040 Hb_000141_040 Hb_000141_040 Hb_000395_290--Hb_000141_040 Hb_017469_020 Hb_017469_020 Hb_000395_290--Hb_017469_020 Hb_002868_010 Hb_002868_010 Hb_000395_290--Hb_002868_010 Hb_000395_290--Hb_004453_170 Hb_002234_140 Hb_002234_140 Hb_000395_290--Hb_002234_140 Hb_000815_060 Hb_000815_060 Hb_022425_040--Hb_000815_060 Hb_022425_040--Hb_002518_080 Hb_015279_010 Hb_015279_010 Hb_022425_040--Hb_015279_010 Hb_000217_030 Hb_000217_030 Hb_022425_040--Hb_000217_030 Hb_022425_040--Hb_000127_180 Hb_001832_060 Hb_001832_060 Hb_022425_040--Hb_001832_060 Hb_011236_010 Hb_011236_010 Hb_004223_040--Hb_011236_010 Hb_008921_020 Hb_008921_020 Hb_004223_040--Hb_008921_020 Hb_012368_020 Hb_012368_020 Hb_004223_040--Hb_012368_020 Hb_004223_040--Hb_007044_130 Hb_000735_040 Hb_000735_040 Hb_004223_040--Hb_000735_040 Hb_004223_040--Hb_000062_650 Hb_156635_010 Hb_156635_010 Hb_002232_040--Hb_156635_010 Hb_002232_040--Hb_124953_020 Hb_000538_240 Hb_000538_240 Hb_002232_040--Hb_000538_240 Hb_002105_100 Hb_002105_100 Hb_002232_040--Hb_002105_100 Hb_001016_150 Hb_001016_150 Hb_002232_040--Hb_001016_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.0783 18.8039 25.101 23.2668 17.2152 16.4324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.6724 71.0356 18.1669 13.2704 6.25837

CAGE analysis