Hb_005015_080

Information

Type -
Description -
Location Contig5015: 57051-59014
Sequence    

Annotation

kegg
ID cic:CICLE_v10026159mg
description hypothetical protein
nr
ID XP_012075231.1
description PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
swissprot
ID Q9SJ05
description Shikimate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=SK1 PE=1 SV=2
trembl
ID A0A067KSL7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09404 PE=3 SV=1
Gene Ontology
ID GO:0004765
description shikimate kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45862: 58426-58963
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005015_080 0.0 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
2 Hb_009545_090 0.0750341717 - - hypothetical protein JCGZ_02186 [Jatropha curcas]
3 Hb_003398_080 0.086107536 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
4 Hb_006198_020 0.087965013 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
5 Hb_003175_030 0.093028429 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
6 Hb_000815_240 0.0955420811 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
7 Hb_021443_090 0.0963405044 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
8 Hb_000802_090 0.0972039358 - - ornithine aminotransferase, putative [Ricinus communis]
9 Hb_000390_250 0.0988040798 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
10 Hb_011360_050 0.0988897197 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
11 Hb_028962_020 0.0991001933 - - hypothetical protein POPTR_0016s00660g [Populus trichocarpa]
12 Hb_002232_480 0.1001541189 - - PREDICTED: telomerase reverse transcriptase [Jatropha curcas]
13 Hb_002071_050 0.1013792559 - - PREDICTED: mitogen-activated protein kinase kinase 5-like [Jatropha curcas]
14 Hb_004143_100 0.1018147565 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001674_030 0.1021526048 - - PREDICTED: BTB/POZ domain-containing protein At2g24240 [Jatropha curcas]
16 Hb_001205_200 0.1023629836 - - conserved hypothetical protein [Ricinus communis]
17 Hb_012239_020 0.1024673841 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
18 Hb_000329_230 0.1053389528 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
19 Hb_001258_100 0.1063709227 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
20 Hb_002492_010 0.1069741345 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]

Gene co-expression network

sample Hb_005015_080 Hb_005015_080 Hb_009545_090 Hb_009545_090 Hb_005015_080--Hb_009545_090 Hb_003398_080 Hb_003398_080 Hb_005015_080--Hb_003398_080 Hb_006198_020 Hb_006198_020 Hb_005015_080--Hb_006198_020 Hb_003175_030 Hb_003175_030 Hb_005015_080--Hb_003175_030 Hb_000815_240 Hb_000815_240 Hb_005015_080--Hb_000815_240 Hb_021443_090 Hb_021443_090 Hb_005015_080--Hb_021443_090 Hb_007943_050 Hb_007943_050 Hb_009545_090--Hb_007943_050 Hb_002232_480 Hb_002232_480 Hb_009545_090--Hb_002232_480 Hb_002869_050 Hb_002869_050 Hb_009545_090--Hb_002869_050 Hb_003925_040 Hb_003925_040 Hb_009545_090--Hb_003925_040 Hb_002553_040 Hb_002553_040 Hb_009545_090--Hb_002553_040 Hb_001300_010 Hb_001300_010 Hb_003398_080--Hb_001300_010 Hb_000861_080 Hb_000861_080 Hb_003398_080--Hb_000861_080 Hb_000402_230 Hb_000402_230 Hb_003398_080--Hb_000402_230 Hb_004994_240 Hb_004994_240 Hb_003398_080--Hb_004994_240 Hb_001545_150 Hb_001545_150 Hb_003398_080--Hb_001545_150 Hb_000120_910 Hb_000120_910 Hb_003398_080--Hb_000120_910 Hb_000197_030 Hb_000197_030 Hb_006198_020--Hb_000197_030 Hb_000418_010 Hb_000418_010 Hb_006198_020--Hb_000418_010 Hb_000059_020 Hb_000059_020 Hb_006198_020--Hb_000059_020 Hb_000069_130 Hb_000069_130 Hb_006198_020--Hb_000069_130 Hb_000940_200 Hb_000940_200 Hb_006198_020--Hb_000940_200 Hb_010381_030 Hb_010381_030 Hb_003175_030--Hb_010381_030 Hb_000886_050 Hb_000886_050 Hb_003175_030--Hb_000886_050 Hb_005389_160 Hb_005389_160 Hb_003175_030--Hb_005389_160 Hb_002078_220 Hb_002078_220 Hb_003175_030--Hb_002078_220 Hb_003752_100 Hb_003752_100 Hb_003175_030--Hb_003752_100 Hb_003175_030--Hb_003398_080 Hb_000390_250 Hb_000390_250 Hb_000815_240--Hb_000390_250 Hb_000991_040 Hb_000991_040 Hb_000815_240--Hb_000991_040 Hb_000329_230 Hb_000329_230 Hb_000815_240--Hb_000329_230 Hb_000395_040 Hb_000395_040 Hb_000815_240--Hb_000395_040 Hb_084490_010 Hb_084490_010 Hb_000815_240--Hb_084490_010 Hb_001146_020 Hb_001146_020 Hb_021443_090--Hb_001146_020 Hb_021443_090--Hb_000815_240 Hb_021443_090--Hb_000418_010 Hb_021443_090--Hb_000991_040 Hb_021443_090--Hb_006198_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.23461 10.1413 5.35686 8.22787 3.03506 4.24153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.98282 3.9189 3.7521 3.23555 3.16901

CAGE analysis