Hb_001146_020

Information

Type -
Description -
Location Contig1146: 11581-12192
Sequence    

Annotation

kegg
ID obr:102715888
description methionine gamma-lyase-like
nr
ID KDO76721.1
description hypothetical protein CISIN_1g013079mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067GN44
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013079mg PE=3 SV=1
Gene Ontology
ID GO:0003824
description methionine gamma-lyase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04419: 10140-12507 , PASA_asmbl_04420: 10140-12507
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001146_020 0.0 - - hypothetical protein CISIN_1g013079mg [Citrus sinensis]
2 Hb_021443_090 0.0960769003 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
3 Hb_005015_080 0.1377883998 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
4 Hb_000815_240 0.1495148673 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
5 Hb_024879_010 0.1519677184 - - unknown [Glycine max]
6 Hb_010661_010 0.1584146708 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
7 Hb_015807_030 0.16696383 - - PREDICTED: protein NDR1-like [Jatropha curcas]
8 Hb_001699_230 0.166984585 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
9 Hb_009545_090 0.1676273806 - - hypothetical protein JCGZ_02186 [Jatropha curcas]
10 Hb_000042_330 0.1679279937 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004917_040 0.1684915549 - - hypothetical protein POPTR_0009s03470g [Populus trichocarpa]
12 Hb_002869_050 0.1698528626 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
13 Hb_127311_010 0.1700023248 - - hypothetical protein JCGZ_07497 [Jatropha curcas]
14 Hb_002071_050 0.1703724057 - - PREDICTED: mitogen-activated protein kinase kinase 5-like [Jatropha curcas]
15 Hb_000418_010 0.1708840301 - - PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Jatropha curcas]
16 Hb_000991_040 0.1717372767 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
17 Hb_000245_080 0.1720449657 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-15 [Jatropha curcas]
18 Hb_003747_210 0.1726704189 - - PREDICTED: uncharacterized protein LOC105630240 [Jatropha curcas]
19 Hb_006788_140 0.1729315994 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
20 Hb_001246_120 0.1750630685 - - PREDICTED: uncharacterized protein LOC105643270 [Jatropha curcas]

Gene co-expression network

sample Hb_001146_020 Hb_001146_020 Hb_021443_090 Hb_021443_090 Hb_001146_020--Hb_021443_090 Hb_005015_080 Hb_005015_080 Hb_001146_020--Hb_005015_080 Hb_000815_240 Hb_000815_240 Hb_001146_020--Hb_000815_240 Hb_024879_010 Hb_024879_010 Hb_001146_020--Hb_024879_010 Hb_010661_010 Hb_010661_010 Hb_001146_020--Hb_010661_010 Hb_015807_030 Hb_015807_030 Hb_001146_020--Hb_015807_030 Hb_021443_090--Hb_005015_080 Hb_021443_090--Hb_000815_240 Hb_000418_010 Hb_000418_010 Hb_021443_090--Hb_000418_010 Hb_000991_040 Hb_000991_040 Hb_021443_090--Hb_000991_040 Hb_006198_020 Hb_006198_020 Hb_021443_090--Hb_006198_020 Hb_009545_090 Hb_009545_090 Hb_005015_080--Hb_009545_090 Hb_003398_080 Hb_003398_080 Hb_005015_080--Hb_003398_080 Hb_005015_080--Hb_006198_020 Hb_003175_030 Hb_003175_030 Hb_005015_080--Hb_003175_030 Hb_005015_080--Hb_000815_240 Hb_000390_250 Hb_000390_250 Hb_000815_240--Hb_000390_250 Hb_000815_240--Hb_000991_040 Hb_000329_230 Hb_000329_230 Hb_000815_240--Hb_000329_230 Hb_000395_040 Hb_000395_040 Hb_000815_240--Hb_000395_040 Hb_084490_010 Hb_084490_010 Hb_000815_240--Hb_084490_010 Hb_000245_080 Hb_000245_080 Hb_024879_010--Hb_000245_080 Hb_074715_010 Hb_074715_010 Hb_024879_010--Hb_074715_010 Hb_003910_010 Hb_003910_010 Hb_024879_010--Hb_003910_010 Hb_000343_140 Hb_000343_140 Hb_024879_010--Hb_000343_140 Hb_004450_050 Hb_004450_050 Hb_024879_010--Hb_004450_050 Hb_004128_030 Hb_004128_030 Hb_010661_010--Hb_004128_030 Hb_001500_030 Hb_001500_030 Hb_010661_010--Hb_001500_030 Hb_127311_010 Hb_127311_010 Hb_010661_010--Hb_127311_010 Hb_000252_210 Hb_000252_210 Hb_010661_010--Hb_000252_210 Hb_003747_210 Hb_003747_210 Hb_010661_010--Hb_003747_210 Hb_001673_060 Hb_001673_060 Hb_010661_010--Hb_001673_060 Hb_000035_050 Hb_000035_050 Hb_015807_030--Hb_000035_050 Hb_004117_170 Hb_004117_170 Hb_015807_030--Hb_004117_170 Hb_001376_010 Hb_001376_010 Hb_015807_030--Hb_001376_010 Hb_002450_030 Hb_002450_030 Hb_015807_030--Hb_002450_030 Hb_000042_330 Hb_000042_330 Hb_015807_030--Hb_000042_330 Hb_000046_310 Hb_000046_310 Hb_015807_030--Hb_000046_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
100.265 190.458 69.8742 215.599 29.0938 32.0625
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
107.373 53.4851 54.7471 52.2145 40.2454

CAGE analysis