Hb_024879_010

Information

Type -
Description -
Location Contig24879: 1874-8241
Sequence    

Annotation

kegg
ID pop:POPTR_0084s00200g
description hypothetical protein
nr
ID ACU18166.1
description unknown [Glycine max]
swissprot
ID -
description -
trembl
ID C6T8L4
description Putative uncharacterized protein OS=Glycine max PE=2 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25883: 2298-5280 , PASA_asmbl_25884: 3908-4016 , PASA_asmbl_25885: 5841-6193
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024879_010 0.0 - - unknown [Glycine max]
2 Hb_000245_080 0.1265022452 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-15 [Jatropha curcas]
3 Hb_074715_010 0.1504436282 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
4 Hb_001146_020 0.1519677184 - - hypothetical protein CISIN_1g013079mg [Citrus sinensis]
5 Hb_003910_010 0.1552279965 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
6 Hb_000343_140 0.1568375867 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
7 Hb_004450_050 0.1582991341 - - PREDICTED: histone chaperone ASF1B [Populus euphratica]
8 Hb_021443_090 0.1585129565 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
9 Hb_003203_020 0.1603723765 - - unknown [Lotus japonicus]
10 Hb_001481_160 0.1663028535 - - PREDICTED: RING-H2 finger protein ATL22-like [Populus euphratica]
11 Hb_000003_540 0.1676200793 - - PREDICTED: homeobox-leucine zipper protein ATHB-15 [Jatropha curcas]
12 Hb_000982_060 0.167910554 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
13 Hb_006698_040 0.16894413 - - bHLH1 transcription factor [Hevea brasiliensis]
14 Hb_000429_050 0.1692509006 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
15 Hb_012940_030 0.1694937683 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
16 Hb_000025_630 0.1696621224 - - PREDICTED: uncharacterized protein LOC105635952 [Jatropha curcas]
17 Hb_002235_210 0.1717179618 - - PREDICTED: vesicle transport v-SNARE 13-like [Populus euphratica]
18 Hb_001922_050 0.1724687217 - - PREDICTED: F-box protein At5g52880 [Jatropha curcas]
19 Hb_002148_020 0.1727204832 - - aldo-keto reductase, putative [Ricinus communis]
20 Hb_000359_090 0.173264874 - - PREDICTED: persulfide dioxygenase ETHE1 homolog, mitochondrial-like [Malus domestica]

Gene co-expression network

sample Hb_024879_010 Hb_024879_010 Hb_000245_080 Hb_000245_080 Hb_024879_010--Hb_000245_080 Hb_074715_010 Hb_074715_010 Hb_024879_010--Hb_074715_010 Hb_001146_020 Hb_001146_020 Hb_024879_010--Hb_001146_020 Hb_003910_010 Hb_003910_010 Hb_024879_010--Hb_003910_010 Hb_000343_140 Hb_000343_140 Hb_024879_010--Hb_000343_140 Hb_004450_050 Hb_004450_050 Hb_024879_010--Hb_004450_050 Hb_000003_540 Hb_000003_540 Hb_000245_080--Hb_000003_540 Hb_005539_310 Hb_005539_310 Hb_000245_080--Hb_005539_310 Hb_006065_050 Hb_006065_050 Hb_000245_080--Hb_006065_050 Hb_000359_140 Hb_000359_140 Hb_000245_080--Hb_000359_140 Hb_001217_040 Hb_001217_040 Hb_000245_080--Hb_001217_040 Hb_005269_040 Hb_005269_040 Hb_074715_010--Hb_005269_040 Hb_005048_130 Hb_005048_130 Hb_074715_010--Hb_005048_130 Hb_002662_020 Hb_002662_020 Hb_074715_010--Hb_002662_020 Hb_001377_270 Hb_001377_270 Hb_074715_010--Hb_001377_270 Hb_004143_040 Hb_004143_040 Hb_074715_010--Hb_004143_040 Hb_028962_020 Hb_028962_020 Hb_074715_010--Hb_028962_020 Hb_021443_090 Hb_021443_090 Hb_001146_020--Hb_021443_090 Hb_005015_080 Hb_005015_080 Hb_001146_020--Hb_005015_080 Hb_000815_240 Hb_000815_240 Hb_001146_020--Hb_000815_240 Hb_010661_010 Hb_010661_010 Hb_001146_020--Hb_010661_010 Hb_015807_030 Hb_015807_030 Hb_001146_020--Hb_015807_030 Hb_029695_050 Hb_029695_050 Hb_003910_010--Hb_029695_050 Hb_131035_010 Hb_131035_010 Hb_003910_010--Hb_131035_010 Hb_135757_010 Hb_135757_010 Hb_003910_010--Hb_135757_010 Hb_011930_150 Hb_011930_150 Hb_003910_010--Hb_011930_150 Hb_000181_290 Hb_000181_290 Hb_003910_010--Hb_000181_290 Hb_001377_280 Hb_001377_280 Hb_000343_140--Hb_001377_280 Hb_000521_160 Hb_000521_160 Hb_000343_140--Hb_000521_160 Hb_004032_030 Hb_004032_030 Hb_000343_140--Hb_004032_030 Hb_003567_030 Hb_003567_030 Hb_000343_140--Hb_003567_030 Hb_183610_010 Hb_183610_010 Hb_000343_140--Hb_183610_010 Hb_001396_110 Hb_001396_110 Hb_004450_050--Hb_001396_110 Hb_009627_030 Hb_009627_030 Hb_004450_050--Hb_009627_030 Hb_004450_050--Hb_000815_240 Hb_005146_080 Hb_005146_080 Hb_004450_050--Hb_005146_080 Hb_005188_030 Hb_005188_030 Hb_004450_050--Hb_005188_030 Hb_006441_020 Hb_006441_020 Hb_004450_050--Hb_006441_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.89399 2.13804 1.10055 4.32705 0.930465 1.007
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.68752 1.60314 1.0347 1.32012 0.366568

CAGE analysis