Hb_005539_310

Information

Type -
Description -
Location Contig5539: 231915-239820
Sequence    

Annotation

kegg
ID rcu:RCOM_0463610
description basic helix-loop-helix-containing protein, putative
nr
ID XP_002532375.1
description basic helix-loop-helix-containing protein, putative [Ricinus communis]
swissprot
ID Q58G01
description Transcription factor bHLH155 OS=Arabidopsis thaliana GN=BHLH155 PE=2 SV=1
trembl
ID B9T2A6
description Basic helix-loop-helix-containing protein, putative OS=Ricinus communis GN=RCOM_0463610 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh155-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48402: 232186-234792 , PASA_asmbl_48403: 238996-239785
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005539_310 0.0 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
2 Hb_001217_040 0.0978992677 - - hypothetical protein MIMGU_mgv1a0002421mg, partial [Erythranthe guttata]
3 Hb_004987_020 0.1048498373 - - -
4 Hb_118507_010 0.1114339424 - - hypothetical protein VITISV_019292 [Vitis vinifera]
5 Hb_000991_040 0.1187486563 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
6 Hb_063716_090 0.1277648609 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000260_600 0.1299695604 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000245_080 0.1319951168 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-15 [Jatropha curcas]
9 Hb_009247_010 0.1328316492 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
10 Hb_004480_020 0.1359920782 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
11 Hb_017948_030 0.1376216924 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
12 Hb_000008_190 0.1404276047 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
13 Hb_000395_040 0.1417660721 - - PREDICTED: uncharacterized protein LOC105645576 [Jatropha curcas]
14 Hb_000418_010 0.1428245576 - - PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Jatropha curcas]
15 Hb_000984_310 0.1445978146 - - Hydrolase, hydrolyzing O-glycosyl compounds, putative [Theobroma cacao]
16 Hb_001754_060 0.1454293056 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
17 Hb_000836_280 0.1483339661 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
18 Hb_007286_020 0.1486351287 - - hypothetical protein L484_010675 [Morus notabilis]
19 Hb_000203_270 0.1504130749 - - alpha-xylosidase, putative [Ricinus communis]
20 Hb_001347_050 0.1507186678 - - serine/threonine protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005539_310 Hb_005539_310 Hb_001217_040 Hb_001217_040 Hb_005539_310--Hb_001217_040 Hb_004987_020 Hb_004987_020 Hb_005539_310--Hb_004987_020 Hb_118507_010 Hb_118507_010 Hb_005539_310--Hb_118507_010 Hb_000991_040 Hb_000991_040 Hb_005539_310--Hb_000991_040 Hb_063716_090 Hb_063716_090 Hb_005539_310--Hb_063716_090 Hb_000260_600 Hb_000260_600 Hb_005539_310--Hb_000260_600 Hb_001217_040--Hb_000260_600 Hb_000359_140 Hb_000359_140 Hb_001217_040--Hb_000359_140 Hb_000984_310 Hb_000984_310 Hb_001217_040--Hb_000984_310 Hb_000245_080 Hb_000245_080 Hb_001217_040--Hb_000245_080 Hb_000890_230 Hb_000890_230 Hb_001217_040--Hb_000890_230 Hb_000203_270 Hb_000203_270 Hb_004987_020--Hb_000203_270 Hb_000679_100 Hb_000679_100 Hb_004987_020--Hb_000679_100 Hb_000085_260 Hb_000085_260 Hb_004987_020--Hb_000085_260 Hb_000395_040 Hb_000395_040 Hb_004987_020--Hb_000395_040 Hb_000890_030 Hb_000890_030 Hb_004987_020--Hb_000890_030 Hb_001195_410 Hb_001195_410 Hb_118507_010--Hb_001195_410 Hb_000008_190 Hb_000008_190 Hb_118507_010--Hb_000008_190 Hb_004480_020 Hb_004480_020 Hb_118507_010--Hb_004480_020 Hb_005535_080 Hb_005535_080 Hb_118507_010--Hb_005535_080 Hb_001124_110 Hb_001124_110 Hb_118507_010--Hb_001124_110 Hb_000622_340 Hb_000622_340 Hb_000991_040--Hb_000622_340 Hb_000991_040--Hb_000260_600 Hb_000815_240 Hb_000815_240 Hb_000991_040--Hb_000815_240 Hb_008937_010 Hb_008937_010 Hb_000991_040--Hb_008937_010 Hb_000390_250 Hb_000390_250 Hb_000991_040--Hb_000390_250 Hb_000322_070 Hb_000322_070 Hb_000991_040--Hb_000322_070 Hb_017948_030 Hb_017948_030 Hb_063716_090--Hb_017948_030 Hb_003599_030 Hb_003599_030 Hb_063716_090--Hb_003599_030 Hb_001675_320 Hb_001675_320 Hb_063716_090--Hb_001675_320 Hb_063716_090--Hb_000203_270 Hb_063716_090--Hb_004987_020 Hb_000140_350 Hb_000140_350 Hb_000260_600--Hb_000140_350 Hb_000260_600--Hb_000890_230 Hb_000260_600--Hb_000322_070 Hb_000009_400 Hb_000009_400 Hb_000260_600--Hb_000009_400 Hb_003617_020 Hb_003617_020 Hb_000260_600--Hb_003617_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.12263 15.6831 6.66913 29.6343 5.70084 8.35439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.39249 4.99092 3.7703 5.56315 4.46316

CAGE analysis