Hb_001217_040

Information

Type -
Description -
Location Contig1217: 71381-77679
Sequence    

Annotation

kegg
ID rcu:RCOM_0866000
description hypothetical protein
nr
ID EYU42463.1
description hypothetical protein MIMGU_mgv1a0002421mg, partial [Erythranthe guttata]
swissprot
ID Q9LH02
description Formin-like protein 17 OS=Arabidopsis thaliana GN=FH17 PE=3 SV=2
trembl
ID A0A022RRV5
description Formin-like protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a0002421mg PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06600: 20599-89930
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001217_040 0.0 - - hypothetical protein MIMGU_mgv1a0002421mg, partial [Erythranthe guttata]
2 Hb_005539_310 0.0978992677 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
3 Hb_000260_600 0.1174245225 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000359_140 0.137295703 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
5 Hb_000984_310 0.1375767949 - - Hydrolase, hydrolyzing O-glycosyl compounds, putative [Theobroma cacao]
6 Hb_000245_080 0.1424934819 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-15 [Jatropha curcas]
7 Hb_000890_230 0.1483938999 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
8 Hb_000991_040 0.150830264 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
9 Hb_024074_020 0.150959658 - - PREDICTED: probable serine/threonine-protein kinase At1g09600 [Jatropha curcas]
10 Hb_183610_010 0.1509793066 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
11 Hb_000836_280 0.1524000617 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
12 Hb_118507_010 0.1542182969 - - hypothetical protein VITISV_019292 [Vitis vinifera]
13 Hb_012651_010 0.1564249061 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
14 Hb_000140_350 0.1574815557 - - conserved hypothetical protein [Ricinus communis]
15 Hb_026740_020 0.1583342883 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
16 Hb_000008_190 0.1584087482 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
17 Hb_002660_110 0.1584964554 - - PREDICTED: serine/threonine-protein kinase-like protein CCR1 isoform X1 [Jatropha curcas]
18 Hb_026228_020 0.1585882191 - - PREDICTED: uncharacterized protein LOC105632747 [Jatropha curcas]
19 Hb_000111_030 0.1588278694 - - PREDICTED: uncharacterized protein LOC104094030 [Nicotiana tomentosiformis]
20 Hb_002192_030 0.1597717899 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001217_040 Hb_001217_040 Hb_005539_310 Hb_005539_310 Hb_001217_040--Hb_005539_310 Hb_000260_600 Hb_000260_600 Hb_001217_040--Hb_000260_600 Hb_000359_140 Hb_000359_140 Hb_001217_040--Hb_000359_140 Hb_000984_310 Hb_000984_310 Hb_001217_040--Hb_000984_310 Hb_000245_080 Hb_000245_080 Hb_001217_040--Hb_000245_080 Hb_000890_230 Hb_000890_230 Hb_001217_040--Hb_000890_230 Hb_004987_020 Hb_004987_020 Hb_005539_310--Hb_004987_020 Hb_118507_010 Hb_118507_010 Hb_005539_310--Hb_118507_010 Hb_000991_040 Hb_000991_040 Hb_005539_310--Hb_000991_040 Hb_063716_090 Hb_063716_090 Hb_005539_310--Hb_063716_090 Hb_005539_310--Hb_000260_600 Hb_000260_600--Hb_000991_040 Hb_000140_350 Hb_000140_350 Hb_000260_600--Hb_000140_350 Hb_000260_600--Hb_000890_230 Hb_000322_070 Hb_000322_070 Hb_000260_600--Hb_000322_070 Hb_000009_400 Hb_000009_400 Hb_000260_600--Hb_000009_400 Hb_003617_020 Hb_003617_020 Hb_000260_600--Hb_003617_020 Hb_027760_070 Hb_027760_070 Hb_000359_140--Hb_027760_070 Hb_001135_140 Hb_001135_140 Hb_000359_140--Hb_001135_140 Hb_074715_010 Hb_074715_010 Hb_000359_140--Hb_074715_010 Hb_000359_140--Hb_000260_600 Hb_000457_140 Hb_000457_140 Hb_000359_140--Hb_000457_140 Hb_000359_140--Hb_000140_350 Hb_001486_190 Hb_001486_190 Hb_000984_310--Hb_001486_190 Hb_001051_070 Hb_001051_070 Hb_000984_310--Hb_001051_070 Hb_012651_010 Hb_012651_010 Hb_000984_310--Hb_012651_010 Hb_000836_280 Hb_000836_280 Hb_000984_310--Hb_000836_280 Hb_000679_100 Hb_000679_100 Hb_000984_310--Hb_000679_100 Hb_000984_310--Hb_000140_350 Hb_000003_540 Hb_000003_540 Hb_000245_080--Hb_000003_540 Hb_024879_010 Hb_024879_010 Hb_000245_080--Hb_024879_010 Hb_000245_080--Hb_005539_310 Hb_006065_050 Hb_006065_050 Hb_000245_080--Hb_006065_050 Hb_000245_080--Hb_000359_140 Hb_008406_180 Hb_008406_180 Hb_000890_230--Hb_008406_180 Hb_086639_080 Hb_086639_080 Hb_000890_230--Hb_086639_080 Hb_000107_080 Hb_000107_080 Hb_000890_230--Hb_000107_080 Hb_000331_370 Hb_000331_370 Hb_000890_230--Hb_000331_370 Hb_000002_480 Hb_000002_480 Hb_000890_230--Hb_000002_480 Hb_000890_230--Hb_012651_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.60678 13.811 5.21857 38.8548 8.98796 12.1789
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.6991 6.64963 6.4417 4.28555 6.31169

CAGE analysis