Hb_027760_070

Information

Type -
Description -
Location Contig27760: 67120-77717
Sequence    

Annotation

kegg
ID mdm:103416640
description uncharacterized endoplasmic reticulum membrane protein C16E8.02-like
nr
ID XP_012067680.1
description PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L9T0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15632 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28997: 67526-68116 , PASA_asmbl_28998: 68345-77067
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027760_070 0.0 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02-like [Jatropha curcas]
2 Hb_030736_070 0.0856825048 - - PREDICTED: general transcription factor IIH subunit 3 isoform X2 [Jatropha curcas]
3 Hb_000139_130 0.0897335558 - - PREDICTED: chloride channel protein CLC-d isoform X1 [Jatropha curcas]
4 Hb_000457_140 0.0940577787 - - PREDICTED: transmembrane protein 136-like [Jatropha curcas]
5 Hb_000359_140 0.1058291209 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
6 Hb_146081_010 0.107161748 - - PREDICTED: protein SCAI [Jatropha curcas]
7 Hb_008143_070 0.1094277035 - - PREDICTED: factor of DNA methylation 4 [Jatropha curcas]
8 Hb_001258_110 0.110845026 - - transporter, putative [Ricinus communis]
9 Hb_004531_120 0.1143883707 - - PREDICTED: uncharacterized protein LOC105635025 [Jatropha curcas]
10 Hb_001486_070 0.1156774908 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
11 Hb_015026_130 0.1173228137 - - quinone oxidoreductase, putative [Ricinus communis]
12 Hb_001033_050 0.1179434259 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]
13 Hb_002662_020 0.118492581 - - PREDICTED: F-box protein At1g47056-like [Jatropha curcas]
14 Hb_000692_150 0.1193759149 - - PREDICTED: probable prolyl 4-hydroxylase 3 [Jatropha curcas]
15 Hb_004109_230 0.1212036038 - - heat shock protein binding protein, putative [Ricinus communis]
16 Hb_004668_060 0.1215030226 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
17 Hb_131035_010 0.121735314 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_001205_110 0.122574821 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
19 Hb_006573_210 0.1238622217 - - PREDICTED: protein SGT1 homolog [Jatropha curcas]
20 Hb_002983_080 0.1239568337 - - acetylornithine aminotransferase, partial [Prunus persica]

Gene co-expression network

sample Hb_027760_070 Hb_027760_070 Hb_030736_070 Hb_030736_070 Hb_027760_070--Hb_030736_070 Hb_000139_130 Hb_000139_130 Hb_027760_070--Hb_000139_130 Hb_000457_140 Hb_000457_140 Hb_027760_070--Hb_000457_140 Hb_000359_140 Hb_000359_140 Hb_027760_070--Hb_000359_140 Hb_146081_010 Hb_146081_010 Hb_027760_070--Hb_146081_010 Hb_008143_070 Hb_008143_070 Hb_027760_070--Hb_008143_070 Hb_030736_070--Hb_146081_010 Hb_030736_070--Hb_008143_070 Hb_001033_050 Hb_001033_050 Hb_030736_070--Hb_001033_050 Hb_030736_070--Hb_000457_140 Hb_000237_190 Hb_000237_190 Hb_030736_070--Hb_000237_190 Hb_000139_130--Hb_001033_050 Hb_004109_230 Hb_004109_230 Hb_000139_130--Hb_004109_230 Hb_004668_060 Hb_004668_060 Hb_000139_130--Hb_004668_060 Hb_001377_160 Hb_001377_160 Hb_000139_130--Hb_001377_160 Hb_061878_010 Hb_061878_010 Hb_000139_130--Hb_061878_010 Hb_004109_370 Hb_004109_370 Hb_000139_130--Hb_004109_370 Hb_001205_110 Hb_001205_110 Hb_000457_140--Hb_001205_110 Hb_010697_040 Hb_010697_040 Hb_000457_140--Hb_010697_040 Hb_000457_140--Hb_008143_070 Hb_001055_030 Hb_001055_030 Hb_000457_140--Hb_001055_030 Hb_001135_140 Hb_001135_140 Hb_000359_140--Hb_001135_140 Hb_074715_010 Hb_074715_010 Hb_000359_140--Hb_074715_010 Hb_000260_600 Hb_000260_600 Hb_000359_140--Hb_000260_600 Hb_000359_140--Hb_000457_140 Hb_000140_350 Hb_000140_350 Hb_000359_140--Hb_000140_350 Hb_000322_070 Hb_000322_070 Hb_146081_010--Hb_000322_070 Hb_162060_010 Hb_162060_010 Hb_146081_010--Hb_162060_010 Hb_001114_110 Hb_001114_110 Hb_146081_010--Hb_001114_110 Hb_000116_150 Hb_000116_150 Hb_146081_010--Hb_000116_150 Hb_145880_010 Hb_145880_010 Hb_146081_010--Hb_145880_010 Hb_008143_070--Hb_001055_030 Hb_000622_250 Hb_000622_250 Hb_008143_070--Hb_000622_250 Hb_005143_030 Hb_005143_030 Hb_008143_070--Hb_005143_030 Hb_003498_120 Hb_003498_120 Hb_008143_070--Hb_003498_120 Hb_001318_020 Hb_001318_020 Hb_008143_070--Hb_001318_020 Hb_008143_070--Hb_004668_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.06658 4.84197 2.00064 6.75034 3.66581 4.97119
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.03992 1.85838 1.11616 4.12352 1.73187

CAGE analysis