Hb_000237_190

Information

Type transcription factor
Description TF Family: SNF2
Location Contig237: 225771-231418
Sequence    

Annotation

kegg
ID pop:POPTR_0009s12350g
description POPTRDRAFT_767399; hypothetical protein
nr
ID XP_012067210.1
description PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X1 [Jatropha curcas]
swissprot
ID F4I8S3
description SNF2 domain-containing protein CLASSY 3 OS=Arabidopsis thaliana GN=CLSY3 PE=1 SV=1
trembl
ID A0A067KZZ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26769 PE=4 SV=1
Gene Ontology
ID GO:0005524
description snf2 domain-containing protein classy 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24797: 227597-230825 , PASA_asmbl_24798: 230968-231601
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000237_190 0.0 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X1 [Jatropha curcas]
2 Hb_000130_020 0.0926122865 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
3 Hb_025194_020 0.1029227393 - - PREDICTED: uncharacterized protein C1F8.04c-like isoform X1 [Jatropha curcas]
4 Hb_002259_080 0.1035522901 - - protein transport protein sec23, putative [Ricinus communis]
5 Hb_000365_030 0.1071341243 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
6 Hb_178968_050 0.1087793613 - - PREDICTED: probable serine incorporator [Jatropha curcas]
7 Hb_030736_070 0.1104256861 - - PREDICTED: general transcription factor IIH subunit 3 isoform X2 [Jatropha curcas]
8 Hb_005048_100 0.1104737458 - - secretory carrier membrane protein, putative [Ricinus communis]
9 Hb_002005_090 0.1106424653 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000635_030 0.1115760955 - - mannosyl-oligosaccharide glucosidase, putative [Ricinus communis]
11 Hb_001301_170 0.1136738125 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
12 Hb_002391_360 0.113781475 - - hypothetical protein CICLE_v10026208mg [Citrus clementina]
13 Hb_006478_060 0.1147422364 - - PREDICTED: homocysteine S-methyltransferase 2 isoform X1 [Jatropha curcas]
14 Hb_178051_070 0.1148184201 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
15 Hb_002890_100 0.1174499063 - - PREDICTED: mitotic spindle checkpoint protein MAD1 isoform X1 [Jatropha curcas]
16 Hb_000640_130 0.1189448644 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
17 Hb_001318_020 0.1207572377 - - HAT dimerization domain-containing protein isoform 2 [Theobroma cacao]
18 Hb_000182_040 0.1207628333 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 24 [Jatropha curcas]
19 Hb_007426_140 0.1213125177 - - ornithine aminotransferase, putative [Ricinus communis]
20 Hb_000307_210 0.1219789265 - - Transportin 1 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000237_190 Hb_000237_190 Hb_000130_020 Hb_000130_020 Hb_000237_190--Hb_000130_020 Hb_025194_020 Hb_025194_020 Hb_000237_190--Hb_025194_020 Hb_002259_080 Hb_002259_080 Hb_000237_190--Hb_002259_080 Hb_000365_030 Hb_000365_030 Hb_000237_190--Hb_000365_030 Hb_178968_050 Hb_178968_050 Hb_000237_190--Hb_178968_050 Hb_030736_070 Hb_030736_070 Hb_000237_190--Hb_030736_070 Hb_000635_030 Hb_000635_030 Hb_000130_020--Hb_000635_030 Hb_000130_020--Hb_178968_050 Hb_000120_280 Hb_000120_280 Hb_000130_020--Hb_000120_280 Hb_140049_080 Hb_140049_080 Hb_000130_020--Hb_140049_080 Hb_001318_020 Hb_001318_020 Hb_000130_020--Hb_001318_020 Hb_141069_010 Hb_141069_010 Hb_000130_020--Hb_141069_010 Hb_005048_100 Hb_005048_100 Hb_025194_020--Hb_005048_100 Hb_025194_020--Hb_000365_030 Hb_001301_170 Hb_001301_170 Hb_025194_020--Hb_001301_170 Hb_004787_080 Hb_004787_080 Hb_025194_020--Hb_004787_080 Hb_025194_020--Hb_002259_080 Hb_002259_080--Hb_000635_030 Hb_002259_080--Hb_141069_010 Hb_002259_080--Hb_000130_020 Hb_002596_060 Hb_002596_060 Hb_002259_080--Hb_002596_060 Hb_000243_300 Hb_000243_300 Hb_002259_080--Hb_000243_300 Hb_002391_360 Hb_002391_360 Hb_002259_080--Hb_002391_360 Hb_000365_030--Hb_000130_020 Hb_000365_030--Hb_178968_050 Hb_001733_030 Hb_001733_030 Hb_000365_030--Hb_001733_030 Hb_004109_370 Hb_004109_370 Hb_000365_030--Hb_004109_370 Hb_000030_060 Hb_000030_060 Hb_000365_030--Hb_000030_060 Hb_000365_030--Hb_000635_030 Hb_000608_230 Hb_000608_230 Hb_178968_050--Hb_000608_230 Hb_178968_050--Hb_140049_080 Hb_002686_040 Hb_002686_040 Hb_178968_050--Hb_002686_040 Hb_178968_050--Hb_004109_370 Hb_027760_070 Hb_027760_070 Hb_030736_070--Hb_027760_070 Hb_146081_010 Hb_146081_010 Hb_030736_070--Hb_146081_010 Hb_008143_070 Hb_008143_070 Hb_030736_070--Hb_008143_070 Hb_001033_050 Hb_001033_050 Hb_030736_070--Hb_001033_050 Hb_000457_140 Hb_000457_140 Hb_030736_070--Hb_000457_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.41019 6.77058 4.05103 5.38668 7.83573 5.01251
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.39655 1.84571 2.29641 10.1151 2.10545

CAGE analysis