Hb_030736_070

Information

Type -
Description -
Location Contig30736: 43435-48300
Sequence    

Annotation

kegg
ID rcu:RCOM_0417820
description RNA polymerase II transcription factor B subunit, putative
nr
ID XP_012078222.1
description PREDICTED: general transcription factor IIH subunit 3 isoform X2 [Jatropha curcas]
swissprot
ID Q8VD76
description General transcription factor IIH subunit 3 OS=Mus musculus GN=Gtf2h3 PE=1 SV=1
trembl
ID A0A067KLW9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12081 PE=4 SV=1
Gene Ontology
ID GO:0000439
description general transcription factor iih subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32477: 40058-42545 , PASA_asmbl_32478: 44033-48300
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030736_070 0.0 - - PREDICTED: general transcription factor IIH subunit 3 isoform X2 [Jatropha curcas]
2 Hb_027760_070 0.0856825048 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02-like [Jatropha curcas]
3 Hb_146081_010 0.0964282589 - - PREDICTED: protein SCAI [Jatropha curcas]
4 Hb_008143_070 0.1076836835 - - PREDICTED: factor of DNA methylation 4 [Jatropha curcas]
5 Hb_001033_050 0.1079986832 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]
6 Hb_000457_140 0.1095256149 - - PREDICTED: transmembrane protein 136-like [Jatropha curcas]
7 Hb_000237_190 0.1104256861 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X1 [Jatropha curcas]
8 Hb_000139_130 0.1113280065 - - PREDICTED: chloride channel protein CLC-d isoform X1 [Jatropha curcas]
9 Hb_056987_010 0.1130935678 - - DNA-damage-repair/toleration protein DRT111, chloroplastic [Glycine soja]
10 Hb_000261_240 0.1150643621 - - RecName: Full=Elongation factor 1-alpha; Short=EF-1-alpha [Manihot esculenta]
11 Hb_167234_010 0.1156431558 - - PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
12 Hb_145880_010 0.117729143 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
13 Hb_002232_320 0.1178534638 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_061878_010 0.1180734309 - - hypothetical protein CISIN_1g0094072mg, partial [Citrus sinensis]
15 Hb_004040_040 0.1196344864 desease resistance Gene Name: ABC_tran hypothetical protein POPTR_0006s07370g [Populus trichocarpa]
16 Hb_002284_170 0.1201734017 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
17 Hb_006355_090 0.1233276093 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
18 Hb_000130_020 0.123345213 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
19 Hb_001489_100 0.1241377587 - - PREDICTED: hypersensitive-induced response protein 2 [Jatropha curcas]
20 Hb_000243_300 0.1244894083 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_030736_070 Hb_030736_070 Hb_027760_070 Hb_027760_070 Hb_030736_070--Hb_027760_070 Hb_146081_010 Hb_146081_010 Hb_030736_070--Hb_146081_010 Hb_008143_070 Hb_008143_070 Hb_030736_070--Hb_008143_070 Hb_001033_050 Hb_001033_050 Hb_030736_070--Hb_001033_050 Hb_000457_140 Hb_000457_140 Hb_030736_070--Hb_000457_140 Hb_000237_190 Hb_000237_190 Hb_030736_070--Hb_000237_190 Hb_000139_130 Hb_000139_130 Hb_027760_070--Hb_000139_130 Hb_027760_070--Hb_000457_140 Hb_000359_140 Hb_000359_140 Hb_027760_070--Hb_000359_140 Hb_027760_070--Hb_146081_010 Hb_027760_070--Hb_008143_070 Hb_000322_070 Hb_000322_070 Hb_146081_010--Hb_000322_070 Hb_162060_010 Hb_162060_010 Hb_146081_010--Hb_162060_010 Hb_001114_110 Hb_001114_110 Hb_146081_010--Hb_001114_110 Hb_000116_150 Hb_000116_150 Hb_146081_010--Hb_000116_150 Hb_145880_010 Hb_145880_010 Hb_146081_010--Hb_145880_010 Hb_001055_030 Hb_001055_030 Hb_008143_070--Hb_001055_030 Hb_000622_250 Hb_000622_250 Hb_008143_070--Hb_000622_250 Hb_005143_030 Hb_005143_030 Hb_008143_070--Hb_005143_030 Hb_003498_120 Hb_003498_120 Hb_008143_070--Hb_003498_120 Hb_001318_020 Hb_001318_020 Hb_008143_070--Hb_001318_020 Hb_004668_060 Hb_004668_060 Hb_008143_070--Hb_004668_060 Hb_004129_070 Hb_004129_070 Hb_001033_050--Hb_004129_070 Hb_001033_050--Hb_000139_130 Hb_001033_050--Hb_004668_060 Hb_001135_120 Hb_001135_120 Hb_001033_050--Hb_001135_120 Hb_008253_020 Hb_008253_020 Hb_001033_050--Hb_008253_020 Hb_010712_090 Hb_010712_090 Hb_001033_050--Hb_010712_090 Hb_001205_110 Hb_001205_110 Hb_000457_140--Hb_001205_110 Hb_010697_040 Hb_010697_040 Hb_000457_140--Hb_010697_040 Hb_000457_140--Hb_008143_070 Hb_000457_140--Hb_001055_030 Hb_000130_020 Hb_000130_020 Hb_000237_190--Hb_000130_020 Hb_025194_020 Hb_025194_020 Hb_000237_190--Hb_025194_020 Hb_002259_080 Hb_002259_080 Hb_000237_190--Hb_002259_080 Hb_000365_030 Hb_000365_030 Hb_000237_190--Hb_000365_030 Hb_178968_050 Hb_178968_050 Hb_000237_190--Hb_178968_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.60395 9.62412 5.02336 10.2514 8.04066 8.6147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.73168 2.96355 2.87452 8.83681 2.05453

CAGE analysis