Hb_001205_110

Information

Type transcription factor
Description TF Family: GRAS
Location Contig1205: 76159-78612
Sequence    

Annotation

kegg
ID rcu:RCOM_0536880
description Chitin-inducible gibberellin-responsive protein, putative
nr
ID XP_012075848.1
description PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
swissprot
ID Q9FL03
description Scarecrow-like protein 4 OS=Arabidopsis thaliana GN=SCL4 PE=2 SV=1
trembl
ID A0A067KR64
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11271 PE=4 SV=1
Gene Ontology
ID GO:0006351
description scarecrow-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06331: 76183-78653
cDNA
(Sanger)
(ID:Location)		 037_G17.ab1: 77767-78653

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001205_110 0.0 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
2 Hb_012239_030 0.0457155113 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_010697_040 0.0911727049 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
4 Hb_008749_030 0.1045204778 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
5 Hb_000139_130 0.1048749295 - - PREDICTED: chloride channel protein CLC-d isoform X1 [Jatropha curcas]
6 Hb_000608_260 0.1121104358 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
7 Hb_002213_040 0.1135023079 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
8 Hb_000487_380 0.1171093257 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
9 Hb_000069_480 0.1183029589 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000365_330 0.1189193341 - - zinc finger protein, putative [Ricinus communis]
11 Hb_000457_140 0.1194978102 - - PREDICTED: transmembrane protein 136-like [Jatropha curcas]
12 Hb_006910_060 0.1210354308 - - PREDICTED: MACPF domain-containing protein At1g14780-like [Jatropha curcas]
13 Hb_000757_100 0.1221017143 - - SPla/RYanodine receptor domain-containing protein isoform 2 [Theobroma cacao]
14 Hb_027760_070 0.122574821 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02-like [Jatropha curcas]
15 Hb_006573_210 0.1231487067 - - PREDICTED: protein SGT1 homolog [Jatropha curcas]
16 Hb_001489_100 0.1233195044 - - PREDICTED: hypersensitive-induced response protein 2 [Jatropha curcas]
17 Hb_000352_070 0.1249521053 - - Potassium transporter, putative [Ricinus communis]
18 Hb_001486_070 0.1255703622 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
19 Hb_000260_600 0.1267696064 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002400_140 0.129773729 - - protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001205_110 Hb_001205_110 Hb_012239_030 Hb_012239_030 Hb_001205_110--Hb_012239_030 Hb_010697_040 Hb_010697_040 Hb_001205_110--Hb_010697_040 Hb_008749_030 Hb_008749_030 Hb_001205_110--Hb_008749_030 Hb_000139_130 Hb_000139_130 Hb_001205_110--Hb_000139_130 Hb_000608_260 Hb_000608_260 Hb_001205_110--Hb_000608_260 Hb_002213_040 Hb_002213_040 Hb_001205_110--Hb_002213_040 Hb_012239_030--Hb_000139_130 Hb_012239_030--Hb_008749_030 Hb_012239_030--Hb_010697_040 Hb_000352_070 Hb_000352_070 Hb_012239_030--Hb_000352_070 Hb_080451_010 Hb_080451_010 Hb_012239_030--Hb_080451_010 Hb_010697_040--Hb_000139_130 Hb_008253_020 Hb_008253_020 Hb_010697_040--Hb_008253_020 Hb_007508_080 Hb_007508_080 Hb_010697_040--Hb_007508_080 Hb_000046_070 Hb_000046_070 Hb_010697_040--Hb_000046_070 Hb_010712_090 Hb_010712_090 Hb_010697_040--Hb_010712_090 Hb_000552_100 Hb_000552_100 Hb_008749_030--Hb_000552_100 Hb_001989_050 Hb_001989_050 Hb_008749_030--Hb_001989_050 Hb_000261_100 Hb_000261_100 Hb_008749_030--Hb_000261_100 Hb_002400_140 Hb_002400_140 Hb_008749_030--Hb_002400_140 Hb_001033_050 Hb_001033_050 Hb_000139_130--Hb_001033_050 Hb_004109_230 Hb_004109_230 Hb_000139_130--Hb_004109_230 Hb_004668_060 Hb_004668_060 Hb_000139_130--Hb_004668_060 Hb_001377_160 Hb_001377_160 Hb_000139_130--Hb_001377_160 Hb_061878_010 Hb_061878_010 Hb_000139_130--Hb_061878_010 Hb_004109_370 Hb_004109_370 Hb_000139_130--Hb_004109_370 Hb_116420_040 Hb_116420_040 Hb_000608_260--Hb_116420_040 Hb_000365_330 Hb_000365_330 Hb_000608_260--Hb_000365_330 Hb_001638_300 Hb_001638_300 Hb_000608_260--Hb_001638_300 Hb_000664_110 Hb_000664_110 Hb_000608_260--Hb_000664_110 Hb_000260_600 Hb_000260_600 Hb_000608_260--Hb_000260_600 Hb_000069_480 Hb_000069_480 Hb_000608_260--Hb_000069_480 Hb_002213_040--Hb_012239_030 Hb_002192_030 Hb_002192_030 Hb_002213_040--Hb_002192_030 Hb_002213_040--Hb_008749_030 Hb_003082_040 Hb_003082_040 Hb_002213_040--Hb_003082_040 Hb_002662_050 Hb_002662_050 Hb_002213_040--Hb_002662_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.3003 30.5957 6.62808 32.1657 17.9869 16.6448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.54864 4.61229 6.37328 15.2504 15.4739

CAGE analysis