Hb_008749_030

Information

Type -
Description -
Location Contig8749: 35167-35589
Sequence    

Annotation

kegg
ID pop:POPTR_0008s12810g
description POPTRDRAFT_820662; hydroxyproline-rich glycoprotein
nr
ID XP_002311500.2
description hydroxyproline-rich glycoprotein [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HJA6
description Hydroxyproline-rich glycoprotein OS=Populus trichocarpa GN=POPTR_0008s12810g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008749_030 0.0 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
2 Hb_001205_110 0.1045204778 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
3 Hb_012239_030 0.1064443081 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_000552_100 0.1074877394 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
5 Hb_001989_050 0.1109511038 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 5 [Jatropha curcas]
6 Hb_000261_100 0.1131667725 - - PREDICTED: beta-galactosidase 9 isoform X2 [Jatropha curcas]
7 Hb_002400_140 0.1163838645 - - protein kinase, putative [Ricinus communis]
8 Hb_006637_020 0.1187229919 - - PREDICTED: uncharacterized protein LOC105642234 [Jatropha curcas]
9 Hb_001486_070 0.118853388 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
10 Hb_001442_060 0.1219473554 - - PREDICTED: uncharacterized protein LOC105638091 isoform X1 [Jatropha curcas]
11 Hb_000062_020 0.122678566 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_000139_130 0.1256149151 - - PREDICTED: chloride channel protein CLC-d isoform X1 [Jatropha curcas]
13 Hb_009193_120 0.1257370902 desease resistance Gene Name: AAA_22 PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
14 Hb_000183_050 0.125975396 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
15 Hb_002333_050 0.1260875306 - - PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]
16 Hb_000086_690 0.1266019365 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
17 Hb_000780_190 0.1276461449 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
18 Hb_006573_170 0.128665697 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000176_130 0.128992839 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
20 Hb_000099_030 0.129140291 - - 6-phosphogluconate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_008749_030 Hb_008749_030 Hb_001205_110 Hb_001205_110 Hb_008749_030--Hb_001205_110 Hb_012239_030 Hb_012239_030 Hb_008749_030--Hb_012239_030 Hb_000552_100 Hb_000552_100 Hb_008749_030--Hb_000552_100 Hb_001989_050 Hb_001989_050 Hb_008749_030--Hb_001989_050 Hb_000261_100 Hb_000261_100 Hb_008749_030--Hb_000261_100 Hb_002400_140 Hb_002400_140 Hb_008749_030--Hb_002400_140 Hb_001205_110--Hb_012239_030 Hb_010697_040 Hb_010697_040 Hb_001205_110--Hb_010697_040 Hb_000139_130 Hb_000139_130 Hb_001205_110--Hb_000139_130 Hb_000608_260 Hb_000608_260 Hb_001205_110--Hb_000608_260 Hb_002213_040 Hb_002213_040 Hb_001205_110--Hb_002213_040 Hb_012239_030--Hb_000139_130 Hb_012239_030--Hb_010697_040 Hb_000352_070 Hb_000352_070 Hb_012239_030--Hb_000352_070 Hb_080451_010 Hb_080451_010 Hb_012239_030--Hb_080451_010 Hb_119600_050 Hb_119600_050 Hb_000552_100--Hb_119600_050 Hb_000723_010 Hb_000723_010 Hb_000552_100--Hb_000723_010 Hb_000800_110 Hb_000800_110 Hb_000552_100--Hb_000800_110 Hb_114151_020 Hb_114151_020 Hb_000552_100--Hb_114151_020 Hb_001437_190 Hb_001437_190 Hb_000552_100--Hb_001437_190 Hb_006573_170 Hb_006573_170 Hb_001989_050--Hb_006573_170 Hb_000176_130 Hb_000176_130 Hb_001989_050--Hb_000176_130 Hb_001492_040 Hb_001492_040 Hb_001989_050--Hb_001492_040 Hb_000086_690 Hb_000086_690 Hb_001989_050--Hb_000086_690 Hb_005214_150 Hb_005214_150 Hb_001989_050--Hb_005214_150 Hb_000836_020 Hb_000836_020 Hb_001989_050--Hb_000836_020 Hb_000780_190 Hb_000780_190 Hb_000261_100--Hb_000780_190 Hb_000284_230 Hb_000284_230 Hb_000261_100--Hb_000284_230 Hb_000035_410 Hb_000035_410 Hb_000261_100--Hb_000035_410 Hb_004701_050 Hb_004701_050 Hb_000261_100--Hb_004701_050 Hb_000183_050 Hb_000183_050 Hb_000261_100--Hb_000183_050 Hb_004109_370 Hb_004109_370 Hb_000261_100--Hb_004109_370 Hb_003581_170 Hb_003581_170 Hb_002400_140--Hb_003581_170 Hb_000105_040 Hb_000105_040 Hb_002400_140--Hb_000105_040 Hb_002400_140--Hb_000836_020 Hb_003604_050 Hb_003604_050 Hb_002400_140--Hb_003604_050 Hb_004648_050 Hb_004648_050 Hb_002400_140--Hb_004648_050 Hb_188063_010 Hb_188063_010 Hb_002400_140--Hb_188063_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.2157 94.0031 17.3227 90.3949 61.8997 88.7932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.5489 17.6143 18.3434 72.1048 82.4567

CAGE analysis