Hb_002213_040

Information

Type -
Description -
Location Contig2213: 57220-61977
Sequence    

Annotation

kegg
ID tcc:TCM_027422
description Cinnamoyl coa reductase 1 isoform 1
nr
ID ADU64758.1
description cinnamoyl-CoA reductase [Hevea brasiliensis]
swissprot
ID Q9S9N9
description Cinnamoyl-CoA reductase 1 OS=Arabidopsis thaliana GN=CCR1 PE=1 SV=1
trembl
ID E9M776
description Cinnamoyl-CoA reductase OS=Hevea brasiliensis GN=CCR PE=2 SV=1
Gene Ontology
ID GO:0016621
description cinnamoyl- reductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22827: 57287-61972
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002213_040 0.0 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
2 Hb_001205_110 0.1135023079 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
3 Hb_012239_030 0.1333376047 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_002192_030 0.1401924273 - - conserved hypothetical protein [Ricinus communis]
5 Hb_008749_030 0.1465640663 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
6 Hb_003082_040 0.1469858949 - - PREDICTED: receptor-like protein kinase HSL1 [Phoenix dactylifera]
7 Hb_002662_050 0.1498620478 - - cysteine protease CP1 [Manihot esculenta]
8 Hb_000413_070 0.1516776538 - - conserved hypothetical protein [Ricinus communis]
9 Hb_028207_060 0.1569674998 - - PREDICTED: uncharacterized protein LOC105639235 [Jatropha curcas]
10 Hb_004116_180 0.1590547313 - - PREDICTED: uncharacterized protein LOC105646147 [Jatropha curcas]
11 Hb_002367_110 0.1594636939 - - PREDICTED: cinnamyl alcohol dehydrogenase 1 [Sesamum indicum]
12 Hb_000630_030 0.1599271847 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 isoform X1 [Populus euphratica]
13 Hb_023765_010 0.1599732048 - - calcineurin-like phosphoesterase [Manihot esculenta]
14 Hb_003998_010 0.1608299731 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]
15 Hb_000608_260 0.1633177326 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
16 Hb_001103_090 0.1640463718 - - PREDICTED: patellin-3 [Populus euphratica]
17 Hb_004355_040 0.1644883758 - - epoxide hydrolase, putative [Ricinus communis]
18 Hb_001059_130 0.164588273 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
19 Hb_150346_010 0.1646011216 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
20 Hb_116420_040 0.1652370215 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002213_040 Hb_002213_040 Hb_001205_110 Hb_001205_110 Hb_002213_040--Hb_001205_110 Hb_012239_030 Hb_012239_030 Hb_002213_040--Hb_012239_030 Hb_002192_030 Hb_002192_030 Hb_002213_040--Hb_002192_030 Hb_008749_030 Hb_008749_030 Hb_002213_040--Hb_008749_030 Hb_003082_040 Hb_003082_040 Hb_002213_040--Hb_003082_040 Hb_002662_050 Hb_002662_050 Hb_002213_040--Hb_002662_050 Hb_001205_110--Hb_012239_030 Hb_010697_040 Hb_010697_040 Hb_001205_110--Hb_010697_040 Hb_001205_110--Hb_008749_030 Hb_000139_130 Hb_000139_130 Hb_001205_110--Hb_000139_130 Hb_000608_260 Hb_000608_260 Hb_001205_110--Hb_000608_260 Hb_012239_030--Hb_000139_130 Hb_012239_030--Hb_008749_030 Hb_012239_030--Hb_010697_040 Hb_000352_070 Hb_000352_070 Hb_012239_030--Hb_000352_070 Hb_080451_010 Hb_080451_010 Hb_012239_030--Hb_080451_010 Hb_007286_020 Hb_007286_020 Hb_002192_030--Hb_007286_020 Hb_131035_010 Hb_131035_010 Hb_002192_030--Hb_131035_010 Hb_000890_230 Hb_000890_230 Hb_002192_030--Hb_000890_230 Hb_086639_080 Hb_086639_080 Hb_002192_030--Hb_086639_080 Hb_027760_070 Hb_027760_070 Hb_002192_030--Hb_027760_070 Hb_000193_300 Hb_000193_300 Hb_002192_030--Hb_000193_300 Hb_000552_100 Hb_000552_100 Hb_008749_030--Hb_000552_100 Hb_001989_050 Hb_001989_050 Hb_008749_030--Hb_001989_050 Hb_000261_100 Hb_000261_100 Hb_008749_030--Hb_000261_100 Hb_002400_140 Hb_002400_140 Hb_008749_030--Hb_002400_140 Hb_001004_120 Hb_001004_120 Hb_003082_040--Hb_001004_120 Hb_002685_030 Hb_002685_030 Hb_003082_040--Hb_002685_030 Hb_030312_010 Hb_030312_010 Hb_003082_040--Hb_030312_010 Hb_003506_020 Hb_003506_020 Hb_003082_040--Hb_003506_020 Hb_000342_140 Hb_000342_140 Hb_003082_040--Hb_000342_140 Hb_002662_050--Hb_012239_030 Hb_000674_010 Hb_000674_010 Hb_002662_050--Hb_000674_010 Hb_002662_050--Hb_001205_110 Hb_008221_170 Hb_008221_170 Hb_002662_050--Hb_008221_170 Hb_023765_010 Hb_023765_010 Hb_002662_050--Hb_023765_010 Hb_000099_030 Hb_000099_030 Hb_002662_050--Hb_000099_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
157.44 216.124 47.2947 337.411 106.221 135.008
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.0938 21.0969 18.0156 122.165 138.663

CAGE analysis