Hb_002662_050

Information

Type -
Description -
Location Contig2662: 53148-58486
Sequence    

Annotation

kegg
ID rcu:RCOM_1589470
description cysteine protease, putative (EC:1.3.1.74)
nr
ID AAX84673.1
description cysteine protease CP1 [Manihot esculenta]
swissprot
ID P43297
description Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1
trembl
ID Q52QX8
description Cysteine protease CP1 OS=Manihot esculenta PE=2 SV=1
Gene Ontology
ID GO:0008234
description low-temperature-induced cysteine proteinase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27812: 53180-58449
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002662_050 0.0 - - cysteine protease CP1 [Manihot esculenta]
2 Hb_012239_030 0.121560468 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_000674_010 0.1279840416 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
4 Hb_001205_110 0.1303976198 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
5 Hb_008221_170 0.1309918362 transcription factor TF Family: BES1 PREDICTED: BES1/BZR1 homolog protein 4 isoform X1 [Populus euphratica]
6 Hb_023765_010 0.1341340332 - - calcineurin-like phosphoesterase [Manihot esculenta]
7 Hb_000099_030 0.1397227482 - - 6-phosphogluconate dehydrogenase, putative [Ricinus communis]
8 Hb_008749_030 0.1445204719 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
9 Hb_006907_140 0.1457481698 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000571_160 0.1474615283 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
11 Hb_117038_010 0.1498420827 - - cysteine protease [Hevea brasiliensis]
12 Hb_002213_040 0.1498620478 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
13 Hb_000656_150 0.1500679018 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
14 Hb_007747_170 0.1518398333 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
15 Hb_000723_010 0.1526977425 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_002005_030 0.1586253795 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
17 Hb_028207_060 0.1598564872 - - PREDICTED: uncharacterized protein LOC105639235 [Jatropha curcas]
18 Hb_001105_160 0.1607879758 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
19 Hb_000792_040 0.1610511244 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
20 Hb_001103_090 0.1619713273 - - PREDICTED: patellin-3 [Populus euphratica]

Gene co-expression network

sample Hb_002662_050 Hb_002662_050 Hb_012239_030 Hb_012239_030 Hb_002662_050--Hb_012239_030 Hb_000674_010 Hb_000674_010 Hb_002662_050--Hb_000674_010 Hb_001205_110 Hb_001205_110 Hb_002662_050--Hb_001205_110 Hb_008221_170 Hb_008221_170 Hb_002662_050--Hb_008221_170 Hb_023765_010 Hb_023765_010 Hb_002662_050--Hb_023765_010 Hb_000099_030 Hb_000099_030 Hb_002662_050--Hb_000099_030 Hb_012239_030--Hb_001205_110 Hb_000139_130 Hb_000139_130 Hb_012239_030--Hb_000139_130 Hb_008749_030 Hb_008749_030 Hb_012239_030--Hb_008749_030 Hb_010697_040 Hb_010697_040 Hb_012239_030--Hb_010697_040 Hb_000352_070 Hb_000352_070 Hb_012239_030--Hb_000352_070 Hb_080451_010 Hb_080451_010 Hb_012239_030--Hb_080451_010 Hb_003058_200 Hb_003058_200 Hb_000674_010--Hb_003058_200 Hb_003125_180 Hb_003125_180 Hb_000674_010--Hb_003125_180 Hb_002072_010 Hb_002072_010 Hb_000674_010--Hb_002072_010 Hb_021297_020 Hb_021297_020 Hb_000674_010--Hb_021297_020 Hb_002851_010 Hb_002851_010 Hb_000674_010--Hb_002851_010 Hb_005000_090 Hb_005000_090 Hb_000674_010--Hb_005000_090 Hb_001205_110--Hb_010697_040 Hb_001205_110--Hb_008749_030 Hb_001205_110--Hb_000139_130 Hb_000608_260 Hb_000608_260 Hb_001205_110--Hb_000608_260 Hb_002213_040 Hb_002213_040 Hb_001205_110--Hb_002213_040 Hb_002046_020 Hb_002046_020 Hb_008221_170--Hb_002046_020 Hb_002631_200 Hb_002631_200 Hb_008221_170--Hb_002631_200 Hb_001105_160 Hb_001105_160 Hb_008221_170--Hb_001105_160 Hb_000487_380 Hb_000487_380 Hb_008221_170--Hb_000487_380 Hb_007576_200 Hb_007576_200 Hb_008221_170--Hb_007576_200 Hb_023765_010--Hb_000674_010 Hb_023765_010--Hb_005000_090 Hb_023765_010--Hb_002072_010 Hb_002400_060 Hb_002400_060 Hb_023765_010--Hb_002400_060 Hb_028077_020 Hb_028077_020 Hb_023765_010--Hb_028077_020 Hb_002367_110 Hb_002367_110 Hb_023765_010--Hb_002367_110 Hb_001442_060 Hb_001442_060 Hb_000099_030--Hb_001442_060 Hb_039946_050 Hb_039946_050 Hb_000099_030--Hb_039946_050 Hb_000238_030 Hb_000238_030 Hb_000099_030--Hb_000238_030 Hb_102698_010 Hb_102698_010 Hb_000099_030--Hb_102698_010 Hb_000453_250 Hb_000453_250 Hb_000099_030--Hb_000453_250 Hb_000001_170 Hb_000001_170 Hb_000099_030--Hb_000001_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.2289 139.274 17.7575 143.831 58.2689 47.1326
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.9538 11.4982 34.132 121.258 98.1737

CAGE analysis