Hb_102698_010

Information

Type -
Description -
Location Contig102698: 13820-20427
Sequence    

Annotation

kegg
ID cic:CICLE_v10008243mg
description hypothetical protein
nr
ID XP_012078513.1
description PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
swissprot
ID Q8L783
description Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1
trembl
ID A0A067KK60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13190 PE=4 SV=1
Gene Ontology
ID GO:0016021
description vacuolar cation proton exchanger 5-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01122: 13731-15459 , PASA_asmbl_01123: 13752-15439 , PASA_asmbl_01124: 19916-20402
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_102698_010 0.0 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
2 Hb_004037_020 0.0638353193 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
3 Hb_000890_060 0.065255834 - - PREDICTED: sucrose nonfermenting 4-like protein [Jatropha curcas]
4 Hb_003517_040 0.0655442817 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
5 Hb_010142_020 0.0657529785 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002890_130 0.0660930938 - - tip120, putative [Ricinus communis]
7 Hb_012286_040 0.0670374398 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
8 Hb_000001_170 0.0670603579 - - amino acid transporter, putative [Ricinus communis]
9 Hb_031527_030 0.0673788483 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
10 Hb_002989_020 0.0683444581 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
11 Hb_004586_220 0.0686946906 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
12 Hb_002749_060 0.0693778486 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
13 Hb_003581_200 0.069418126 - - PREDICTED: uncharacterized protein LOC105640179 [Jatropha curcas]
14 Hb_000981_030 0.0702903186 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
15 Hb_000238_030 0.0710942202 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_000322_080 0.0718285886 - - hypothetical protein JCGZ_07423 [Jatropha curcas]
17 Hb_000537_050 0.0718919174 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
18 Hb_000345_160 0.0722206143 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
19 Hb_000140_290 0.0724379434 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Populus euphratica]
20 Hb_011231_020 0.0728352736 - - PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_102698_010 Hb_102698_010 Hb_004037_020 Hb_004037_020 Hb_102698_010--Hb_004037_020 Hb_000890_060 Hb_000890_060 Hb_102698_010--Hb_000890_060 Hb_003517_040 Hb_003517_040 Hb_102698_010--Hb_003517_040 Hb_010142_020 Hb_010142_020 Hb_102698_010--Hb_010142_020 Hb_002890_130 Hb_002890_130 Hb_102698_010--Hb_002890_130 Hb_012286_040 Hb_012286_040 Hb_102698_010--Hb_012286_040 Hb_016172_030 Hb_016172_030 Hb_004037_020--Hb_016172_030 Hb_000345_160 Hb_000345_160 Hb_004037_020--Hb_000345_160 Hb_001481_060 Hb_001481_060 Hb_004037_020--Hb_001481_060 Hb_086063_020 Hb_086063_020 Hb_004037_020--Hb_086063_020 Hb_000317_100 Hb_000317_100 Hb_004037_020--Hb_000317_100 Hb_004705_170 Hb_004705_170 Hb_004037_020--Hb_004705_170 Hb_000590_050 Hb_000590_050 Hb_000890_060--Hb_000590_050 Hb_000008_290 Hb_000008_290 Hb_000890_060--Hb_000008_290 Hb_000327_270 Hb_000327_270 Hb_000890_060--Hb_000327_270 Hb_001814_030 Hb_001814_030 Hb_000890_060--Hb_001814_030 Hb_007426_110 Hb_007426_110 Hb_000890_060--Hb_007426_110 Hb_020378_030 Hb_020378_030 Hb_000890_060--Hb_020378_030 Hb_000976_140 Hb_000976_140 Hb_003517_040--Hb_000976_140 Hb_001789_110 Hb_001789_110 Hb_003517_040--Hb_001789_110 Hb_000138_100 Hb_000138_100 Hb_003517_040--Hb_000138_100 Hb_003734_010 Hb_003734_010 Hb_003517_040--Hb_003734_010 Hb_000441_090 Hb_000441_090 Hb_003517_040--Hb_000441_090 Hb_002263_020 Hb_002263_020 Hb_003517_040--Hb_002263_020 Hb_011063_050 Hb_011063_050 Hb_010142_020--Hb_011063_050 Hb_002989_020 Hb_002989_020 Hb_010142_020--Hb_002989_020 Hb_000614_240 Hb_000614_240 Hb_010142_020--Hb_000614_240 Hb_001500_140 Hb_001500_140 Hb_010142_020--Hb_001500_140 Hb_000140_290 Hb_000140_290 Hb_010142_020--Hb_000140_290 Hb_003683_020 Hb_003683_020 Hb_010142_020--Hb_003683_020 Hb_011819_020 Hb_011819_020 Hb_002890_130--Hb_011819_020 Hb_002411_110 Hb_002411_110 Hb_002890_130--Hb_002411_110 Hb_002890_130--Hb_000317_100 Hb_005215_010 Hb_005215_010 Hb_002890_130--Hb_005215_010 Hb_000003_100 Hb_000003_100 Hb_002890_130--Hb_000003_100 Hb_000261_480 Hb_000261_480 Hb_002890_130--Hb_000261_480 Hb_031527_030 Hb_031527_030 Hb_012286_040--Hb_031527_030 Hb_002749_060 Hb_002749_060 Hb_012286_040--Hb_002749_060 Hb_041327_010 Hb_041327_010 Hb_012286_040--Hb_041327_010 Hb_012286_040--Hb_000003_100 Hb_012286_040--Hb_002890_130 Hb_012092_060 Hb_012092_060 Hb_012286_040--Hb_012092_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.14469 8.79142 7.4912 11.4633 6.12213 7.96802
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.779 5.38904 6.09524 11.7528 10.5435

CAGE analysis