Hb_000608_260

Information

Type -
Description -
Location Contig608: 122538-128653
Sequence    

Annotation

kegg
ID rcu:RCOM_1077980
description protein phosphatase-2c, putative (EC:3.1.3.16)
nr
ID XP_012085772.1
description PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
swissprot
ID Q9M8R7
description Probable protein phosphatase 2C 33 OS=Arabidopsis thaliana GN=PPC6-1 PE=1 SV=1
trembl
ID A0A067JSD6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18034 PE=4 SV=1
Gene Ontology
ID GO:0004721
description probable protein phosphatase 2c 33

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50844: 122717-127519 , PASA_asmbl_50845: 122932-124027 , PASA_asmbl_50846: 124054-124270 , PASA_asmbl_50847: 124505-124767
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_260 0.0 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
2 Hb_116420_040 0.0903663786 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000365_330 0.1074963737 - - zinc finger protein, putative [Ricinus communis]
4 Hb_001638_300 0.1091598173 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]
5 Hb_000664_110 0.1105489441 - - PREDICTED: monoglyceride lipase [Jatropha curcas]
6 Hb_000260_600 0.1109149615 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000069_480 0.1114299031 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001205_110 0.1121104358 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
9 Hb_010697_040 0.1131073844 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
10 Hb_132840_100 0.1141320102 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]
11 Hb_002081_120 0.1141629499 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
12 Hb_000059_200 0.1160870235 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
13 Hb_001349_030 0.1171844461 - - PREDICTED: uncharacterized protein LOC105641975 isoform X1 [Jatropha curcas]
14 Hb_001489_100 0.1178648459 - - PREDICTED: hypersensitive-induced response protein 2 [Jatropha curcas]
15 Hb_001488_270 0.1204779818 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
16 Hb_000139_130 0.1207551251 - - PREDICTED: chloride channel protein CLC-d isoform X1 [Jatropha curcas]
17 Hb_005000_320 0.1212471503 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
18 Hb_001493_080 0.1213184737 - - PREDICTED: RING-H2 finger protein ATL3-like [Jatropha curcas]
19 Hb_001033_050 0.121620359 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]
20 Hb_000780_170 0.1234188848 - - PREDICTED: OBERON-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_000608_260 Hb_000608_260 Hb_116420_040 Hb_116420_040 Hb_000608_260--Hb_116420_040 Hb_000365_330 Hb_000365_330 Hb_000608_260--Hb_000365_330 Hb_001638_300 Hb_001638_300 Hb_000608_260--Hb_001638_300 Hb_000664_110 Hb_000664_110 Hb_000608_260--Hb_000664_110 Hb_000260_600 Hb_000260_600 Hb_000608_260--Hb_000260_600 Hb_000069_480 Hb_000069_480 Hb_000608_260--Hb_000069_480 Hb_000069_570 Hb_000069_570 Hb_116420_040--Hb_000069_570 Hb_001349_030 Hb_001349_030 Hb_116420_040--Hb_001349_030 Hb_001194_020 Hb_001194_020 Hb_116420_040--Hb_001194_020 Hb_005048_140 Hb_005048_140 Hb_116420_040--Hb_005048_140 Hb_001059_130 Hb_001059_130 Hb_116420_040--Hb_001059_130 Hb_000365_330--Hb_001638_300 Hb_000365_330--Hb_000664_110 Hb_005946_210 Hb_005946_210 Hb_000365_330--Hb_005946_210 Hb_000352_070 Hb_000352_070 Hb_000365_330--Hb_000352_070 Hb_132840_100 Hb_132840_100 Hb_000365_330--Hb_132840_100 Hb_001109_060 Hb_001109_060 Hb_000365_330--Hb_001109_060 Hb_001638_300--Hb_132840_100 Hb_004129_070 Hb_004129_070 Hb_001638_300--Hb_004129_070 Hb_032920_130 Hb_032920_130 Hb_001638_300--Hb_032920_130 Hb_147505_010 Hb_147505_010 Hb_001638_300--Hb_147505_010 Hb_001033_050 Hb_001033_050 Hb_001638_300--Hb_001033_050 Hb_010272_010 Hb_010272_010 Hb_000664_110--Hb_010272_010 Hb_012215_010 Hb_012215_010 Hb_000664_110--Hb_012215_010 Hb_000664_110--Hb_005946_210 Hb_000640_070 Hb_000640_070 Hb_000664_110--Hb_000640_070 Hb_000664_110--Hb_001109_060 Hb_000362_170 Hb_000362_170 Hb_000664_110--Hb_000362_170 Hb_000991_040 Hb_000991_040 Hb_000260_600--Hb_000991_040 Hb_000140_350 Hb_000140_350 Hb_000260_600--Hb_000140_350 Hb_000890_230 Hb_000890_230 Hb_000260_600--Hb_000890_230 Hb_000322_070 Hb_000322_070 Hb_000260_600--Hb_000322_070 Hb_000009_400 Hb_000009_400 Hb_000260_600--Hb_000009_400 Hb_003617_020 Hb_003617_020 Hb_000260_600--Hb_003617_020 Hb_003912_040 Hb_003912_040 Hb_000069_480--Hb_003912_040 Hb_004128_130 Hb_004128_130 Hb_000069_480--Hb_004128_130 Hb_004429_010 Hb_004429_010 Hb_000069_480--Hb_004429_010 Hb_001489_100 Hb_001489_100 Hb_000069_480--Hb_001489_100 Hb_008253_020 Hb_008253_020 Hb_000069_480--Hb_008253_020 Hb_000418_010 Hb_000418_010 Hb_000069_480--Hb_000418_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.908 31.3664 14.1334 32.1582 18.7388 25.7012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.40644 5.48054 6.94215 8.58341 16.0596

CAGE analysis