Hb_116420_040

Information

Type -
Description -
Location Contig116420: 15146-16435
Sequence    

Annotation

kegg
ID rcu:RCOM_0581610
description hypothetical protein
nr
ID XP_002525302.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SY57
description Protein PHLOEM PROTEIN 2-LIKE A10 OS=Arabidopsis thaliana GN=PP2A10 PE=2 SV=1
trembl
ID B9SH33
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0581610 PE=4 SV=1
Gene Ontology
ID GO:0009743
description protein phloem protein 2-like a10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05089: 15369-16362
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116420_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000608_260 0.0903663786 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
3 Hb_000069_570 0.091582816 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
4 Hb_001349_030 0.109206443 - - PREDICTED: uncharacterized protein LOC105641975 isoform X1 [Jatropha curcas]
5 Hb_001194_020 0.1092837677 - - microtubule associated protein xmap215, putative [Ricinus communis]
6 Hb_005048_140 0.1170905811 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001059_130 0.1188086421 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
8 Hb_000365_330 0.1190344542 - - zinc finger protein, putative [Ricinus communis]
9 Hb_003376_260 0.1190846587 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
10 Hb_000664_110 0.1206052843 - - PREDICTED: monoglyceride lipase [Jatropha curcas]
11 Hb_010315_020 0.1237000958 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
12 Hb_004701_050 0.12396503 - - alpha1 family protein [Populus trichocarpa]
13 Hb_006355_020 0.1241884679 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
14 Hb_000630_030 0.1244212622 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 isoform X1 [Populus euphratica]
15 Hb_000588_080 0.1266142359 - - PREDICTED: uncharacterized protein LOC105638459 [Jatropha curcas]
16 Hb_002311_190 0.1303627058 - - PREDICTED: uncharacterized protein LOC105643493 [Jatropha curcas]
17 Hb_001488_270 0.1314707808 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
18 Hb_000640_070 0.132233696 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
19 Hb_008014_040 0.1327675883 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
20 Hb_000347_560 0.13541721 - - -

Gene co-expression network

sample Hb_116420_040 Hb_116420_040 Hb_000608_260 Hb_000608_260 Hb_116420_040--Hb_000608_260 Hb_000069_570 Hb_000069_570 Hb_116420_040--Hb_000069_570 Hb_001349_030 Hb_001349_030 Hb_116420_040--Hb_001349_030 Hb_001194_020 Hb_001194_020 Hb_116420_040--Hb_001194_020 Hb_005048_140 Hb_005048_140 Hb_116420_040--Hb_005048_140 Hb_001059_130 Hb_001059_130 Hb_116420_040--Hb_001059_130 Hb_000365_330 Hb_000365_330 Hb_000608_260--Hb_000365_330 Hb_001638_300 Hb_001638_300 Hb_000608_260--Hb_001638_300 Hb_000664_110 Hb_000664_110 Hb_000608_260--Hb_000664_110 Hb_000260_600 Hb_000260_600 Hb_000608_260--Hb_000260_600 Hb_000069_480 Hb_000069_480 Hb_000608_260--Hb_000069_480 Hb_008014_040 Hb_008014_040 Hb_000069_570--Hb_008014_040 Hb_000022_190 Hb_000022_190 Hb_000069_570--Hb_000022_190 Hb_000069_570--Hb_005048_140 Hb_010315_020 Hb_010315_020 Hb_000069_570--Hb_010315_020 Hb_162275_040 Hb_162275_040 Hb_000069_570--Hb_162275_040 Hb_001349_030--Hb_000664_110 Hb_007800_020 Hb_007800_020 Hb_001349_030--Hb_007800_020 Hb_000637_140 Hb_000637_140 Hb_001349_030--Hb_000637_140 Hb_002400_320 Hb_002400_320 Hb_001349_030--Hb_002400_320 Hb_002311_190 Hb_002311_190 Hb_001349_030--Hb_002311_190 Hb_000588_080 Hb_000588_080 Hb_001349_030--Hb_000588_080 Hb_008397_010 Hb_008397_010 Hb_001194_020--Hb_008397_010 Hb_000284_230 Hb_000284_230 Hb_001194_020--Hb_000284_230 Hb_000640_070 Hb_000640_070 Hb_001194_020--Hb_000640_070 Hb_073973_150 Hb_073973_150 Hb_001194_020--Hb_073973_150 Hb_006355_020 Hb_006355_020 Hb_001194_020--Hb_006355_020 Hb_001194_020--Hb_001059_130 Hb_002471_180 Hb_002471_180 Hb_005048_140--Hb_002471_180 Hb_041327_020 Hb_041327_020 Hb_005048_140--Hb_041327_020 Hb_005048_140--Hb_000022_190 Hb_003376_260 Hb_003376_260 Hb_005048_140--Hb_003376_260 Hb_001059_130--Hb_000284_230 Hb_001059_130--Hb_000588_080 Hb_000358_100 Hb_000358_100 Hb_001059_130--Hb_000358_100 Hb_000020_160 Hb_000020_160 Hb_001059_130--Hb_000020_160 Hb_001059_130--Hb_006355_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.29231 4.53388 2.73677 5.53277 3.23446 4.61296
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.2658 0.732171 0.656091 1.64038 4.01575

CAGE analysis