Hb_002311_190

Information

Type -
Description -
Location Contig2311: 93566-96487
Sequence    

Annotation

kegg
ID rcu:RCOM_0999300
description hypothetical protein
nr
ID XP_012084012.1
description PREDICTED: uncharacterized protein LOC105643493 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K6I0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18950 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24311: 93250-94417 , PASA_asmbl_24312: 94514-94749 , PASA_asmbl_24313: 94816-95263
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_190 0.0 - - PREDICTED: uncharacterized protein LOC105643493 [Jatropha curcas]
2 Hb_006022_010 0.090994037 - - PREDICTED: uncharacterized protein LOC105628883 [Jatropha curcas]
3 Hb_012262_040 0.0984785121 - - PREDICTED: uncharacterized protein LOC105633697 [Jatropha curcas]
4 Hb_000503_020 0.0988800719 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
5 Hb_001623_110 0.1006410581 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
6 Hb_004738_030 0.1022021125 - - Inactive protein kinase [Gossypium arboreum]
7 Hb_001349_030 0.1050895435 - - PREDICTED: uncharacterized protein LOC105641975 isoform X1 [Jatropha curcas]
8 Hb_007800_020 0.1060027138 - - PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Jatropha curcas]
9 Hb_005895_010 0.109695668 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
10 Hb_171334_010 0.1107660585 - - PREDICTED: CDPK-related kinase 5 [Jatropha curcas]
11 Hb_001153_050 0.1130551081 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]
12 Hb_002053_050 0.1141302839 - - Kinesin heavy chain, putative [Ricinus communis]
13 Hb_000069_570 0.1197095974 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
14 Hb_002539_110 0.1198838677 - - hypothetical protein JCGZ_15697 [Jatropha curcas]
15 Hb_000054_040 0.121149866 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Jatropha curcas]
16 Hb_001194_020 0.1218788762 - - microtubule associated protein xmap215, putative [Ricinus communis]
17 Hb_000640_070 0.1232772793 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
18 Hb_008014_040 0.1237500277 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
19 Hb_073973_150 0.1240187104 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
20 Hb_000922_060 0.1268913904 - - kinesin light chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_002311_190 Hb_002311_190 Hb_006022_010 Hb_006022_010 Hb_002311_190--Hb_006022_010 Hb_012262_040 Hb_012262_040 Hb_002311_190--Hb_012262_040 Hb_000503_020 Hb_000503_020 Hb_002311_190--Hb_000503_020 Hb_001623_110 Hb_001623_110 Hb_002311_190--Hb_001623_110 Hb_004738_030 Hb_004738_030 Hb_002311_190--Hb_004738_030 Hb_001349_030 Hb_001349_030 Hb_002311_190--Hb_001349_030 Hb_000300_550 Hb_000300_550 Hb_006022_010--Hb_000300_550 Hb_000046_600 Hb_000046_600 Hb_006022_010--Hb_000046_600 Hb_000640_190 Hb_000640_190 Hb_006022_010--Hb_000640_190 Hb_007800_020 Hb_007800_020 Hb_006022_010--Hb_007800_020 Hb_006022_010--Hb_001623_110 Hb_002249_020 Hb_002249_020 Hb_006022_010--Hb_002249_020 Hb_002045_170 Hb_002045_170 Hb_012262_040--Hb_002045_170 Hb_001427_210 Hb_001427_210 Hb_012262_040--Hb_001427_210 Hb_000862_100 Hb_000862_100 Hb_012262_040--Hb_000862_100 Hb_000359_190 Hb_000359_190 Hb_012262_040--Hb_000359_190 Hb_001153_050 Hb_001153_050 Hb_012262_040--Hb_001153_050 Hb_000054_040 Hb_000054_040 Hb_000503_020--Hb_000054_040 Hb_005062_110 Hb_005062_110 Hb_000503_020--Hb_005062_110 Hb_000320_290 Hb_000320_290 Hb_000503_020--Hb_000320_290 Hb_000085_260 Hb_000085_260 Hb_000503_020--Hb_000085_260 Hb_006120_050 Hb_006120_050 Hb_000503_020--Hb_006120_050 Hb_001246_130 Hb_001246_130 Hb_000503_020--Hb_001246_130 Hb_012760_030 Hb_012760_030 Hb_001623_110--Hb_012760_030 Hb_001623_110--Hb_000300_550 Hb_000580_030 Hb_000580_030 Hb_001623_110--Hb_000580_030 Hb_001623_110--Hb_007800_020 Hb_000805_210 Hb_000805_210 Hb_001623_110--Hb_000805_210 Hb_009222_070 Hb_009222_070 Hb_004738_030--Hb_009222_070 Hb_004738_030--Hb_001349_030 Hb_002053_050 Hb_002053_050 Hb_004738_030--Hb_002053_050 Hb_004738_030--Hb_000503_020 Hb_000665_190 Hb_000665_190 Hb_004738_030--Hb_000665_190 Hb_000664_110 Hb_000664_110 Hb_001349_030--Hb_000664_110 Hb_001349_030--Hb_007800_020 Hb_000637_140 Hb_000637_140 Hb_001349_030--Hb_000637_140 Hb_002400_320 Hb_002400_320 Hb_001349_030--Hb_002400_320 Hb_000588_080 Hb_000588_080 Hb_001349_030--Hb_000588_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.86267 3.26321 4.65699 6.41188 3.56298 2.796
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.03944 0.757095 1.18565 1.40612 4.27202

CAGE analysis