Hb_001427_210

Information

Type -
Description -
Location Contig1427: 166163-176705
Sequence    

Annotation

kegg
ID rcu:RCOM_1048240
description Mitochondrial-processing peptidase subunit beta, mitochondrial precursor, putative (EC:3.4.24.64)
nr
ID XP_012076806.1
description PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
swissprot
ID P45181
description Probable zinc protease PqqL OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=pqqL PE=3 SV=1
trembl
ID B9RKC8
description Mitochondrial-processing peptidase subunit beta, mitochondrial, putative OS=Ricinus communis GN=RCOM_1048240 PE=3 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial-processing peptidase subunit mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11333: 166224-167820 , PASA_asmbl_11334: 167929-168224 , PASA_asmbl_11335: 168654-176637 , PASA_asmbl_11336: 168542-176637
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001427_210 0.0 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
2 Hb_003470_070 0.0771392583 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
3 Hb_012262_040 0.0897223979 - - PREDICTED: uncharacterized protein LOC105633697 [Jatropha curcas]
4 Hb_000175_630 0.093978529 - - PREDICTED: pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Jatropha curcas]
5 Hb_000562_070 0.0978465868 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
6 Hb_000098_240 0.104977101 - - PREDICTED: UDP-glucose:glycoprotein glucosyltransferase [Jatropha curcas]
7 Hb_020141_040 0.1059777492 transcription factor TF Family: STAT conserved hypothetical protein [Ricinus communis]
8 Hb_004324_330 0.1092609228 - - PREDICTED: uncharacterized protein LOC105648374 [Jatropha curcas]
9 Hb_005181_040 0.1094993986 - - PREDICTED: MAP kinase kinase MKK1/SSP32-like [Jatropha curcas]
10 Hb_000878_160 0.1095289101 - - PREDICTED: D-lactate dehydrogenase [cytochrome], mitochondrial [Jatropha curcas]
11 Hb_000589_190 0.1112599794 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
12 Hb_001040_070 0.112150099 - - PREDICTED: uncharacterized protein LOC105649523 [Jatropha curcas]
13 Hb_006573_160 0.1146801188 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
14 Hb_002014_040 0.1150340499 - - site-1 protease, putative [Ricinus communis]
15 Hb_006022_010 0.115979322 - - PREDICTED: uncharacterized protein LOC105628883 [Jatropha curcas]
16 Hb_002942_210 0.1166036606 - - alpha-2,8-sialyltransferase 8b, putative [Ricinus communis]
17 Hb_005895_010 0.120804994 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
18 Hb_000302_190 0.1209914752 - - PREDICTED: uncharacterized protein At3g49140-like [Jatropha curcas]
19 Hb_003228_100 0.1214364397 - - PREDICTED: kinesin-related protein 4 [Jatropha curcas]
20 Hb_001277_340 0.1216569503 - - aldo/keto reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001427_210 Hb_001427_210 Hb_003470_070 Hb_003470_070 Hb_001427_210--Hb_003470_070 Hb_012262_040 Hb_012262_040 Hb_001427_210--Hb_012262_040 Hb_000175_630 Hb_000175_630 Hb_001427_210--Hb_000175_630 Hb_000562_070 Hb_000562_070 Hb_001427_210--Hb_000562_070 Hb_000098_240 Hb_000098_240 Hb_001427_210--Hb_000098_240 Hb_020141_040 Hb_020141_040 Hb_001427_210--Hb_020141_040 Hb_003470_070--Hb_000562_070 Hb_005181_040 Hb_005181_040 Hb_003470_070--Hb_005181_040 Hb_001040_070 Hb_001040_070 Hb_003470_070--Hb_001040_070 Hb_001411_030 Hb_001411_030 Hb_003470_070--Hb_001411_030 Hb_001277_340 Hb_001277_340 Hb_003470_070--Hb_001277_340 Hb_002045_170 Hb_002045_170 Hb_012262_040--Hb_002045_170 Hb_000862_100 Hb_000862_100 Hb_012262_040--Hb_000862_100 Hb_000359_190 Hb_000359_190 Hb_012262_040--Hb_000359_190 Hb_001153_050 Hb_001153_050 Hb_012262_040--Hb_001153_050 Hb_002311_190 Hb_002311_190 Hb_012262_040--Hb_002311_190 Hb_000041_300 Hb_000041_300 Hb_000175_630--Hb_000041_300 Hb_000264_180 Hb_000264_180 Hb_000175_630--Hb_000264_180 Hb_000334_170 Hb_000334_170 Hb_000175_630--Hb_000334_170 Hb_000175_630--Hb_003470_070 Hb_000175_630--Hb_012262_040 Hb_000529_130 Hb_000529_130 Hb_000562_070--Hb_000529_130 Hb_000562_070--Hb_001277_340 Hb_001279_020 Hb_001279_020 Hb_000562_070--Hb_001279_020 Hb_029552_020 Hb_029552_020 Hb_000562_070--Hb_029552_020 Hb_005305_130 Hb_005305_130 Hb_000562_070--Hb_005305_130 Hb_000771_170 Hb_000771_170 Hb_000562_070--Hb_000771_170 Hb_033642_040 Hb_033642_040 Hb_000098_240--Hb_033642_040 Hb_016448_010 Hb_016448_010 Hb_000098_240--Hb_016448_010 Hb_000878_160 Hb_000878_160 Hb_000098_240--Hb_000878_160 Hb_001158_160 Hb_001158_160 Hb_000098_240--Hb_001158_160 Hb_026234_010 Hb_026234_010 Hb_000098_240--Hb_026234_010 Hb_000820_150 Hb_000820_150 Hb_000098_240--Hb_000820_150 Hb_103747_020 Hb_103747_020 Hb_020141_040--Hb_103747_020 Hb_000589_190 Hb_000589_190 Hb_020141_040--Hb_000589_190 Hb_002014_040 Hb_002014_040 Hb_020141_040--Hb_002014_040 Hb_000130_420 Hb_000130_420 Hb_020141_040--Hb_000130_420 Hb_025668_010 Hb_025668_010 Hb_020141_040--Hb_025668_010 Hb_002942_210 Hb_002942_210 Hb_020141_040--Hb_002942_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.15145 5.02773 9.52393 5.72656 6.41696 4.32218
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.73821 1.84455 1.29037 3.47127 6.90922

CAGE analysis