Hb_005181_040

Information

Type -
Description -
Location Contig5181: 13705-19692
Sequence    

Annotation

kegg
ID rcu:RCOM_1000600
description map3k delta-1 protein kinase, putative (EC:2.7.11.25)
nr
ID XP_012084067.1
description PREDICTED: MAP kinase kinase MKK1/SSP32-like [Jatropha curcas]
swissprot
ID Q9FPR3
description Serine/threonine-protein kinase EDR1 OS=Arabidopsis thaliana GN=EDR1 PE=1 SV=1
trembl
ID A0A067K6L3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18990 PE=4 SV=1
Gene Ontology
ID GO:0005622
description map3k delta-1 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46556: 13794-18131 , PASA_asmbl_46558: 16949-17261 , PASA_asmbl_46559: 18151-19267 , PASA_asmbl_46560: 19412-19772
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005181_040 0.0 - - PREDICTED: MAP kinase kinase MKK1/SSP32-like [Jatropha curcas]
2 Hb_000086_150 0.0817327135 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X1 [Jatropha curcas]
3 Hb_001040_070 0.0886242638 - - PREDICTED: uncharacterized protein LOC105649523 [Jatropha curcas]
4 Hb_000243_130 0.0999893962 - - hypothetical protein M569_10795, partial [Genlisea aurea]
5 Hb_003470_070 0.102001873 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
6 Hb_009486_080 0.1036158658 - - PREDICTED: uncharacterized protein LOC105643242 [Jatropha curcas]
7 Hb_002461_020 0.1044953063 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
8 Hb_001427_210 0.1094993986 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
9 Hb_011202_030 0.1095494611 - - arsenite-resistance protein, putative [Ricinus communis]
10 Hb_007305_020 0.1097165682 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
11 Hb_001221_090 0.1126198823 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
12 Hb_000334_130 0.1134042668 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
13 Hb_004324_330 0.1144898354 - - PREDICTED: uncharacterized protein LOC105648374 [Jatropha curcas]
14 Hb_004294_020 0.1163346067 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
15 Hb_001194_020 0.1173792172 - - microtubule associated protein xmap215, putative [Ricinus communis]
16 Hb_033554_020 0.1183288492 transcription factor TF Family: BES1 PREDICTED: beta-amylase 8 [Jatropha curcas]
17 Hb_000732_070 0.118961215 - - PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
18 Hb_005323_010 0.1195818277 - - PREDICTED: uncharacterized protein LOC105642810 [Jatropha curcas]
19 Hb_000334_170 0.1206787029 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP42 isoform X1 [Jatropha curcas]
20 Hb_001411_030 0.1208353172 - - hypothetical protein POPTR_0003s09620g [Populus trichocarpa]

Gene co-expression network

sample Hb_005181_040 Hb_005181_040 Hb_000086_150 Hb_000086_150 Hb_005181_040--Hb_000086_150 Hb_001040_070 Hb_001040_070 Hb_005181_040--Hb_001040_070 Hb_000243_130 Hb_000243_130 Hb_005181_040--Hb_000243_130 Hb_003470_070 Hb_003470_070 Hb_005181_040--Hb_003470_070 Hb_009486_080 Hb_009486_080 Hb_005181_040--Hb_009486_080 Hb_002461_020 Hb_002461_020 Hb_005181_040--Hb_002461_020 Hb_007305_020 Hb_007305_020 Hb_000086_150--Hb_007305_020 Hb_000086_150--Hb_009486_080 Hb_000573_060 Hb_000573_060 Hb_000086_150--Hb_000573_060 Hb_003124_160 Hb_003124_160 Hb_000086_150--Hb_003124_160 Hb_000260_560 Hb_000260_560 Hb_000086_150--Hb_000260_560 Hb_002641_130 Hb_002641_130 Hb_000086_150--Hb_002641_130 Hb_000264_180 Hb_000264_180 Hb_001040_070--Hb_000264_180 Hb_000334_170 Hb_000334_170 Hb_001040_070--Hb_000334_170 Hb_001040_070--Hb_003470_070 Hb_004254_100 Hb_004254_100 Hb_001040_070--Hb_004254_100 Hb_005701_090 Hb_005701_090 Hb_001040_070--Hb_005701_090 Hb_044486_040 Hb_044486_040 Hb_000243_130--Hb_044486_040 Hb_007894_160 Hb_007894_160 Hb_000243_130--Hb_007894_160 Hb_004064_050 Hb_004064_050 Hb_000243_130--Hb_004064_050 Hb_033554_020 Hb_033554_020 Hb_000243_130--Hb_033554_020 Hb_002475_040 Hb_002475_040 Hb_000243_130--Hb_002475_040 Hb_000243_130--Hb_009486_080 Hb_001427_210 Hb_001427_210 Hb_003470_070--Hb_001427_210 Hb_000562_070 Hb_000562_070 Hb_003470_070--Hb_000562_070 Hb_001411_030 Hb_001411_030 Hb_003470_070--Hb_001411_030 Hb_001277_340 Hb_001277_340 Hb_003470_070--Hb_001277_340 Hb_009486_080--Hb_002641_130 Hb_009486_080--Hb_000573_060 Hb_002014_040 Hb_002014_040 Hb_009486_080--Hb_002014_040 Hb_001454_170 Hb_001454_170 Hb_009486_080--Hb_001454_170 Hb_009486_080--Hb_000260_560 Hb_005333_140 Hb_005333_140 Hb_002461_020--Hb_005333_140 Hb_000996_020 Hb_000996_020 Hb_002461_020--Hb_000996_020 Hb_000030_140 Hb_000030_140 Hb_002461_020--Hb_000030_140 Hb_000260_760 Hb_000260_760 Hb_002461_020--Hb_000260_760 Hb_001221_090 Hb_001221_090 Hb_002461_020--Hb_001221_090 Hb_170077_010 Hb_170077_010 Hb_002461_020--Hb_170077_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.46131 10.231 9.55098 6.53929 10.347 6.03792
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.84977 1.45253 1.36242 6.89754 9.90277

CAGE analysis