Hb_004254_100

Information

Type -
Description -
Location Contig4254: 75855-91337
Sequence    

Annotation

kegg
ID rcu:RCOM_1158850
description synaptotagmin, putative
nr
ID XP_012093013.1
description PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
swissprot
ID Q8L706
description Synaptotagmin-5 OS=Arabidopsis thaliana GN=SYT5 PE=2 SV=1
trembl
ID A0A067J8M7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05895 PE=4 SV=1
Gene Ontology
ID GO:0005515
description c2 domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42015: 75822-76198 , PASA_asmbl_42016: 76219-78825 , PASA_asmbl_42018: 81463-81720 , PASA_asmbl_42019: 86697-89637 , PASA_asmbl_42020: 90962-91331
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004254_100 0.0 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
2 Hb_002942_130 0.0782994315 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
3 Hb_003900_030 0.0965056184 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41720 isoform X1 [Jatropha curcas]
4 Hb_000771_170 0.1043076288 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
5 Hb_001040_070 0.1049097467 - - PREDICTED: uncharacterized protein LOC105649523 [Jatropha curcas]
6 Hb_001408_030 0.1099959668 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
7 Hb_005883_020 0.1103215664 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74850, chloroplastic [Jatropha curcas]
8 Hb_003734_080 0.1158563649 - - myosin vIII, putative [Ricinus communis]
9 Hb_007035_040 0.1162308363 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
10 Hb_011616_040 0.1183480926 - - glucan water dikinase 3, partial [Manihot esculenta]
11 Hb_001828_120 0.1184314011 - - PREDICTED: uncharacterized protein LOC105140167 [Populus euphratica]
12 Hb_001437_120 0.1192354535 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Jatropha curcas]
13 Hb_000264_230 0.1197758148 - - PREDICTED: uncharacterized protein LOC105649528 [Jatropha curcas]
14 Hb_007192_090 0.1213530845 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
15 Hb_002233_130 0.12217425 - - transporter, putative [Ricinus communis]
16 Hb_008092_050 0.1281466689 - - PREDICTED: uncharacterized protein LOC105142434 [Populus euphratica]
17 Hb_004837_020 0.1291017109 - - PREDICTED: uncharacterized protein LOC105648271 [Jatropha curcas]
18 Hb_001411_030 0.1316017188 - - hypothetical protein POPTR_0003s09620g [Populus trichocarpa]
19 Hb_003929_220 0.1321615872 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_005211_020 0.1326656587 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004254_100 Hb_004254_100 Hb_002942_130 Hb_002942_130 Hb_004254_100--Hb_002942_130 Hb_003900_030 Hb_003900_030 Hb_004254_100--Hb_003900_030 Hb_000771_170 Hb_000771_170 Hb_004254_100--Hb_000771_170 Hb_001040_070 Hb_001040_070 Hb_004254_100--Hb_001040_070 Hb_001408_030 Hb_001408_030 Hb_004254_100--Hb_001408_030 Hb_005883_020 Hb_005883_020 Hb_004254_100--Hb_005883_020 Hb_001437_120 Hb_001437_120 Hb_002942_130--Hb_001437_120 Hb_000320_360 Hb_000320_360 Hb_002942_130--Hb_000320_360 Hb_003734_080 Hb_003734_080 Hb_002942_130--Hb_003734_080 Hb_007192_090 Hb_007192_090 Hb_002942_130--Hb_007192_090 Hb_011616_040 Hb_011616_040 Hb_002942_130--Hb_011616_040 Hb_003900_030--Hb_005883_020 Hb_002233_130 Hb_002233_130 Hb_003900_030--Hb_002233_130 Hb_007035_040 Hb_007035_040 Hb_003900_030--Hb_007035_040 Hb_001916_100 Hb_001916_100 Hb_003900_030--Hb_001916_100 Hb_000363_060 Hb_000363_060 Hb_003900_030--Hb_000363_060 Hb_002600_070 Hb_002600_070 Hb_000771_170--Hb_002600_070 Hb_004225_040 Hb_004225_040 Hb_000771_170--Hb_004225_040 Hb_000562_070 Hb_000562_070 Hb_000771_170--Hb_000562_070 Hb_001472_160 Hb_001472_160 Hb_000771_170--Hb_001472_160 Hb_004884_180 Hb_004884_180 Hb_000771_170--Hb_004884_180 Hb_000482_050 Hb_000482_050 Hb_000771_170--Hb_000482_050 Hb_005181_040 Hb_005181_040 Hb_001040_070--Hb_005181_040 Hb_000264_180 Hb_000264_180 Hb_001040_070--Hb_000264_180 Hb_000334_170 Hb_000334_170 Hb_001040_070--Hb_000334_170 Hb_003470_070 Hb_003470_070 Hb_001040_070--Hb_003470_070 Hb_005701_090 Hb_005701_090 Hb_001040_070--Hb_005701_090 Hb_008092_050 Hb_008092_050 Hb_001408_030--Hb_008092_050 Hb_008092_060 Hb_008092_060 Hb_001408_030--Hb_008092_060 Hb_001408_030--Hb_001437_120 Hb_003929_220 Hb_003929_220 Hb_001408_030--Hb_003929_220 Hb_001396_240 Hb_001396_240 Hb_001408_030--Hb_001396_240 Hb_001828_120 Hb_001828_120 Hb_005883_020--Hb_001828_120 Hb_000358_140 Hb_000358_140 Hb_005883_020--Hb_000358_140 Hb_005883_020--Hb_007192_090 Hb_005883_020--Hb_002233_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.72202 7.20807 8.01418 2.94697 5.90631 4.13304
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.33231 0.949733 0.871884 3.9888 12.4829

CAGE analysis