Hb_003900_030

Information

Type -
Description -
Location Contig3900: 80574-88138
Sequence    

Annotation

kegg
ID rcu:RCOM_1215710
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012086181.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g41720 isoform X1 [Jatropha curcas]
swissprot
ID Q8RWS8
description Pentatricopeptide repeat-containing protein At2g41720 OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1
trembl
ID A0A067K1D3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21098 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at2g41720-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39140: 80658-134499 , PASA_asmbl_39141: 80658-86224 , PASA_asmbl_39142: 80658-84350
cDNA
(Sanger)
(ID:Location)		 017_I11.ab1: 80659-84957

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003900_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41720 isoform X1 [Jatropha curcas]
2 Hb_005883_020 0.08570752 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74850, chloroplastic [Jatropha curcas]
3 Hb_002233_130 0.0907729127 - - transporter, putative [Ricinus communis]
4 Hb_004254_100 0.0965056184 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
5 Hb_007035_040 0.1093641306 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
6 Hb_001916_100 0.1094481763 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g09950 [Jatropha curcas]
7 Hb_000363_060 0.1106490036 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
8 Hb_000358_140 0.1116589189 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001408_030 0.1129980417 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
10 Hb_002328_040 0.1149304178 - - PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic [Jatropha curcas]
11 Hb_000264_230 0.1151084195 - - PREDICTED: uncharacterized protein LOC105649528 [Jatropha curcas]
12 Hb_000260_560 0.1158191205 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Jatropha curcas]
13 Hb_008206_060 0.1219774985 - - PREDICTED: preprotein translocase subunit SCY1, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_002027_090 0.1228437095 - - -
15 Hb_000376_060 0.1238533188 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
16 Hb_005271_160 0.1242380582 - - PREDICTED: uncharacterized protein LOC105645844 [Jatropha curcas]
17 Hb_000334_170 0.1245485569 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP42 isoform X1 [Jatropha curcas]
18 Hb_007192_090 0.1255541616 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
19 Hb_008092_050 0.1259620958 - - PREDICTED: uncharacterized protein LOC105142434 [Populus euphratica]
20 Hb_001828_120 0.1278523459 - - PREDICTED: uncharacterized protein LOC105140167 [Populus euphratica]

Gene co-expression network

sample Hb_003900_030 Hb_003900_030 Hb_005883_020 Hb_005883_020 Hb_003900_030--Hb_005883_020 Hb_002233_130 Hb_002233_130 Hb_003900_030--Hb_002233_130 Hb_004254_100 Hb_004254_100 Hb_003900_030--Hb_004254_100 Hb_007035_040 Hb_007035_040 Hb_003900_030--Hb_007035_040 Hb_001916_100 Hb_001916_100 Hb_003900_030--Hb_001916_100 Hb_000363_060 Hb_000363_060 Hb_003900_030--Hb_000363_060 Hb_001828_120 Hb_001828_120 Hb_005883_020--Hb_001828_120 Hb_000358_140 Hb_000358_140 Hb_005883_020--Hb_000358_140 Hb_007192_090 Hb_007192_090 Hb_005883_020--Hb_007192_090 Hb_005883_020--Hb_004254_100 Hb_005883_020--Hb_002233_130 Hb_001244_150 Hb_001244_150 Hb_002233_130--Hb_001244_150 Hb_000260_560 Hb_000260_560 Hb_002233_130--Hb_000260_560 Hb_004324_330 Hb_004324_330 Hb_002233_130--Hb_004324_330 Hb_007305_020 Hb_007305_020 Hb_002233_130--Hb_007305_020 Hb_002233_130--Hb_007035_040 Hb_002328_040 Hb_002328_040 Hb_002233_130--Hb_002328_040 Hb_002942_130 Hb_002942_130 Hb_004254_100--Hb_002942_130 Hb_000771_170 Hb_000771_170 Hb_004254_100--Hb_000771_170 Hb_001040_070 Hb_001040_070 Hb_004254_100--Hb_001040_070 Hb_001408_030 Hb_001408_030 Hb_004254_100--Hb_001408_030 Hb_000245_150 Hb_000245_150 Hb_007035_040--Hb_000245_150 Hb_000320_470 Hb_000320_470 Hb_007035_040--Hb_000320_470 Hb_000331_130 Hb_000331_130 Hb_007035_040--Hb_000331_130 Hb_004884_180 Hb_004884_180 Hb_007035_040--Hb_004884_180 Hb_001008_050 Hb_001008_050 Hb_007035_040--Hb_001008_050 Hb_001916_100--Hb_000358_140 Hb_010812_050 Hb_010812_050 Hb_001916_100--Hb_010812_050 Hb_002027_090 Hb_002027_090 Hb_001916_100--Hb_002027_090 Hb_001916_100--Hb_005883_020 Hb_001916_100--Hb_002233_130 Hb_001660_120 Hb_001660_120 Hb_000363_060--Hb_001660_120 Hb_025477_050 Hb_025477_050 Hb_000363_060--Hb_025477_050 Hb_031042_060 Hb_031042_060 Hb_000363_060--Hb_031042_060 Hb_001472_160 Hb_001472_160 Hb_000363_060--Hb_001472_160 Hb_000363_060--Hb_000331_130 Hb_000144_060 Hb_000144_060 Hb_000363_060--Hb_000144_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.95489 4.90191 6.02336 2.31687 5.67143 4.60493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.10708 1.13774 1.55067 2.10764 10.1435

CAGE analysis