Hb_001040_070

Information

Type -
Description -
Location Contig1040: 150325-154768
Sequence    

Annotation

kegg
ID gmx:100777318
description uncharacterized LOC100777318
nr
ID XP_012091579.1
description PREDICTED: uncharacterized protein LOC105649523 [Jatropha curcas]
swissprot
ID Q5ZM74
description RING finger protein 141 OS=Gallus gallus GN=RNF141 PE=2 SV=1
trembl
ID A0A067JN49
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21420 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring finger protein 141

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01462: 150356-154802 , PASA_asmbl_01464: 152479-152776
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001040_070 0.0 - - PREDICTED: uncharacterized protein LOC105649523 [Jatropha curcas]
2 Hb_005181_040 0.0886242638 - - PREDICTED: MAP kinase kinase MKK1/SSP32-like [Jatropha curcas]
3 Hb_000264_180 0.1003208008 - - PREDICTED: uncharacterized protein LOC100777318 [Glycine max]
4 Hb_000334_170 0.1012952958 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP42 isoform X1 [Jatropha curcas]
5 Hb_003470_070 0.1044674848 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
6 Hb_004254_100 0.1049097467 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
7 Hb_005701_090 0.1090205688 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_001427_210 0.112150099 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
9 Hb_005323_010 0.1143679217 - - PREDICTED: uncharacterized protein LOC105642810 [Jatropha curcas]
10 Hb_000175_630 0.1204285482 - - PREDICTED: pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Jatropha curcas]
11 Hb_007035_040 0.1232998519 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
12 Hb_004324_330 0.1251882891 - - PREDICTED: uncharacterized protein LOC105648374 [Jatropha curcas]
13 Hb_001411_030 0.1253288552 - - hypothetical protein POPTR_0003s09620g [Populus trichocarpa]
14 Hb_000224_220 0.1260659181 - - PREDICTED: protein disulfide isomerase-like 2-3 [Jatropha curcas]
15 Hb_000771_170 0.1261506304 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_000086_150 0.1267964284 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X1 [Jatropha curcas]
17 Hb_022250_100 0.1295018738 - - calnexin, putative [Ricinus communis]
18 Hb_001789_020 0.1298905654 - - PREDICTED: tripeptidyl-peptidase 2 isoform X1 [Jatropha curcas]
19 Hb_000041_300 0.1327478681 transcription factor TF Family: SNF2 PREDICTED: uncharacterized ATP-dependent helicase C23E6.02 isoform X2 [Jatropha curcas]
20 Hb_000878_160 0.1339516238 - - PREDICTED: D-lactate dehydrogenase [cytochrome], mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001040_070 Hb_001040_070 Hb_005181_040 Hb_005181_040 Hb_001040_070--Hb_005181_040 Hb_000264_180 Hb_000264_180 Hb_001040_070--Hb_000264_180 Hb_000334_170 Hb_000334_170 Hb_001040_070--Hb_000334_170 Hb_003470_070 Hb_003470_070 Hb_001040_070--Hb_003470_070 Hb_004254_100 Hb_004254_100 Hb_001040_070--Hb_004254_100 Hb_005701_090 Hb_005701_090 Hb_001040_070--Hb_005701_090 Hb_000086_150 Hb_000086_150 Hb_005181_040--Hb_000086_150 Hb_000243_130 Hb_000243_130 Hb_005181_040--Hb_000243_130 Hb_005181_040--Hb_003470_070 Hb_009486_080 Hb_009486_080 Hb_005181_040--Hb_009486_080 Hb_002461_020 Hb_002461_020 Hb_005181_040--Hb_002461_020 Hb_000175_630 Hb_000175_630 Hb_000264_180--Hb_000175_630 Hb_006573_160 Hb_006573_160 Hb_000264_180--Hb_006573_160 Hb_003026_030 Hb_003026_030 Hb_000264_180--Hb_003026_030 Hb_044155_010 Hb_044155_010 Hb_000264_180--Hb_044155_010 Hb_001427_210 Hb_001427_210 Hb_000264_180--Hb_001427_210 Hb_000260_560 Hb_000260_560 Hb_000334_170--Hb_000260_560 Hb_001232_100 Hb_001232_100 Hb_000334_170--Hb_001232_100 Hb_000334_170--Hb_000175_630 Hb_000264_230 Hb_000264_230 Hb_000334_170--Hb_000264_230 Hb_000041_300 Hb_000041_300 Hb_000334_170--Hb_000041_300 Hb_003470_070--Hb_001427_210 Hb_000562_070 Hb_000562_070 Hb_003470_070--Hb_000562_070 Hb_001411_030 Hb_001411_030 Hb_003470_070--Hb_001411_030 Hb_001277_340 Hb_001277_340 Hb_003470_070--Hb_001277_340 Hb_002942_130 Hb_002942_130 Hb_004254_100--Hb_002942_130 Hb_003900_030 Hb_003900_030 Hb_004254_100--Hb_003900_030 Hb_000771_170 Hb_000771_170 Hb_004254_100--Hb_000771_170 Hb_001408_030 Hb_001408_030 Hb_004254_100--Hb_001408_030 Hb_005883_020 Hb_005883_020 Hb_004254_100--Hb_005883_020 Hb_001140_180 Hb_001140_180 Hb_005701_090--Hb_001140_180 Hb_000224_220 Hb_000224_220 Hb_005701_090--Hb_000224_220 Hb_000302_190 Hb_000302_190 Hb_005701_090--Hb_000302_190 Hb_000300_560 Hb_000300_560 Hb_005701_090--Hb_000300_560 Hb_000878_160 Hb_000878_160 Hb_005701_090--Hb_000878_160 Hb_001789_020 Hb_001789_020 Hb_005701_090--Hb_001789_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.3461 35.6796 58.2083 24.9805 50.2585 25.3141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.73872 4.65186 7.07717 31.9872 56.4543

CAGE analysis