Hb_000264_230

Information

Type -
Description -
Location Contig264: 185511-189964
Sequence    

Annotation

kegg
ID rcu:RCOM_0936040
description DNA mismatch repair protein muts2, putative
nr
ID XP_012091584.1
description PREDICTED: uncharacterized protein LOC105649528 [Jatropha curcas]
swissprot
ID P73625
description Endonuclease MutS2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=mutS2 PE=3 SV=1
trembl
ID B9RZ79
description DNA mismatch repair protein muts2, putative OS=Ricinus communis GN=RCOM_0936040 PE=3 SV=1
Gene Ontology
ID GO:0005524
description dna mismatch repair protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27608: 185632-185818 , PASA_asmbl_27609: 185878-186918 , PASA_asmbl_27610: 186920-187085 , PASA_asmbl_27612: 187489-187661 , PASA_asmbl_27613: 187790-187962 , PASA_asmbl_27614: 188065-188780 , PASA_asmbl_27615: 188788-189130
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000264_230 0.0 - - PREDICTED: uncharacterized protein LOC105649528 [Jatropha curcas]
2 Hb_000334_170 0.1105503577 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP42 isoform X1 [Jatropha curcas]
3 Hb_003900_030 0.1151084195 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41720 isoform X1 [Jatropha curcas]
4 Hb_003734_080 0.1170861656 - - myosin vIII, putative [Ricinus communis]
5 Hb_000260_560 0.1190705055 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Jatropha curcas]
6 Hb_007192_090 0.1195452118 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
7 Hb_004254_100 0.1197758148 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
8 Hb_005883_020 0.1220241409 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74850, chloroplastic [Jatropha curcas]
9 Hb_002942_130 0.1264110845 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
10 Hb_002233_130 0.1275509239 - - transporter, putative [Ricinus communis]
11 Hb_002400_230 0.1332251499 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
12 Hb_013405_160 0.134990378 - - PREDICTED: methyltransferase-like protein 1 isoform X2 [Jatropha curcas]
13 Hb_002328_040 0.1363847211 - - PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic [Jatropha curcas]
14 Hb_001828_120 0.1397982488 - - PREDICTED: uncharacterized protein LOC105140167 [Populus euphratica]
15 Hb_000732_070 0.1432241777 - - PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
16 Hb_004324_330 0.1435854188 - - PREDICTED: uncharacterized protein LOC105648374 [Jatropha curcas]
17 Hb_000771_170 0.1441594279 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
18 Hb_002687_090 0.1446649058 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
19 Hb_003470_070 0.1450957859 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
20 Hb_005211_020 0.1453324935 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000264_230 Hb_000264_230 Hb_000334_170 Hb_000334_170 Hb_000264_230--Hb_000334_170 Hb_003900_030 Hb_003900_030 Hb_000264_230--Hb_003900_030 Hb_003734_080 Hb_003734_080 Hb_000264_230--Hb_003734_080 Hb_000260_560 Hb_000260_560 Hb_000264_230--Hb_000260_560 Hb_007192_090 Hb_007192_090 Hb_000264_230--Hb_007192_090 Hb_004254_100 Hb_004254_100 Hb_000264_230--Hb_004254_100 Hb_000334_170--Hb_000260_560 Hb_001040_070 Hb_001040_070 Hb_000334_170--Hb_001040_070 Hb_001232_100 Hb_001232_100 Hb_000334_170--Hb_001232_100 Hb_000175_630 Hb_000175_630 Hb_000334_170--Hb_000175_630 Hb_000041_300 Hb_000041_300 Hb_000334_170--Hb_000041_300 Hb_005883_020 Hb_005883_020 Hb_003900_030--Hb_005883_020 Hb_002233_130 Hb_002233_130 Hb_003900_030--Hb_002233_130 Hb_003900_030--Hb_004254_100 Hb_007035_040 Hb_007035_040 Hb_003900_030--Hb_007035_040 Hb_001916_100 Hb_001916_100 Hb_003900_030--Hb_001916_100 Hb_000363_060 Hb_000363_060 Hb_003900_030--Hb_000363_060 Hb_002249_030 Hb_002249_030 Hb_003734_080--Hb_002249_030 Hb_003734_080--Hb_007192_090 Hb_002942_130 Hb_002942_130 Hb_003734_080--Hb_002942_130 Hb_003734_080--Hb_004254_100 Hb_000170_160 Hb_000170_160 Hb_003734_080--Hb_000170_160 Hb_000958_070 Hb_000958_070 Hb_000260_560--Hb_000958_070 Hb_000260_560--Hb_002233_130 Hb_000573_060 Hb_000573_060 Hb_000260_560--Hb_000573_060 Hb_000086_150 Hb_000086_150 Hb_000260_560--Hb_000086_150 Hb_001244_150 Hb_001244_150 Hb_000260_560--Hb_001244_150 Hb_009486_080 Hb_009486_080 Hb_000260_560--Hb_009486_080 Hb_001472_160 Hb_001472_160 Hb_007192_090--Hb_001472_160 Hb_001828_120 Hb_001828_120 Hb_007192_090--Hb_001828_120 Hb_007769_040 Hb_007769_040 Hb_007192_090--Hb_007769_040 Hb_002973_110 Hb_002973_110 Hb_007192_090--Hb_002973_110 Hb_025477_050 Hb_025477_050 Hb_007192_090--Hb_025477_050 Hb_000589_110 Hb_000589_110 Hb_007192_090--Hb_000589_110 Hb_004254_100--Hb_002942_130 Hb_000771_170 Hb_000771_170 Hb_004254_100--Hb_000771_170 Hb_004254_100--Hb_001040_070 Hb_001408_030 Hb_001408_030 Hb_004254_100--Hb_001408_030 Hb_004254_100--Hb_005883_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.8096 4.90513 3.74458 2.1168 4.40113 1.81541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.648572 1.15441 0.928864 1.20053 6.5263

CAGE analysis