Hb_000041_300

Information

Type transcription factor
Description TF Family: SNF2
Location Contig41: 407724-422981
Sequence    

Annotation

kegg
ID rcu:RCOM_1454140
description DNA repair helicase rad5,16, putative (EC:2.7.11.1)
nr
ID XP_012068570.1
description PREDICTED: uncharacterized ATP-dependent helicase C23E6.02 isoform X2 [Jatropha curcas]
swissprot
ID O60177
description Uncharacterized ATP-dependent helicase C23E6.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC23E6.02 PE=3 SV=1
trembl
ID A0A067KZQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24472 PE=4 SV=1
Gene Ontology
ID GO:0003824
description uncharacterized atp-dependent helicase isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40514: 411780-412025 , PASA_asmbl_40516: 419043-419366
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000041_300 0.0 transcription factor TF Family: SNF2 PREDICTED: uncharacterized ATP-dependent helicase C23E6.02 isoform X2 [Jatropha curcas]
2 Hb_022250_100 0.0869188407 - - calnexin, putative [Ricinus communis]
3 Hb_000175_630 0.0940014904 - - PREDICTED: pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Jatropha curcas]
4 Hb_004225_040 0.1016264552 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Populus euphratica]
5 Hb_000334_170 0.112774343 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP42 isoform X1 [Jatropha curcas]
6 Hb_026053_040 0.1136871049 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000261_050 0.1149571088 - - PREDICTED: probable magnesium transporter NIPA2 [Populus euphratica]
8 Hb_000958_070 0.1155796689 - - hypothetical protein PRUPE_ppa007681mg [Prunus persica]
9 Hb_004631_150 0.1160347849 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
10 Hb_000363_060 0.1180294452 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
11 Hb_002233_130 0.1180690364 - - transporter, putative [Ricinus communis]
12 Hb_000260_560 0.1203023925 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Jatropha curcas]
13 Hb_000771_170 0.1206747744 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
14 Hb_002328_040 0.1232679211 - - PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic [Jatropha curcas]
15 Hb_000562_070 0.1237218193 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
16 Hb_000684_350 0.1248092228 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
17 Hb_004884_180 0.1288110862 - - PREDICTED: protein TIC 56, chloroplastic [Jatropha curcas]
18 Hb_000836_290 0.1294599813 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
19 Hb_001472_160 0.1305441891 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
20 Hb_000224_220 0.1305672994 - - PREDICTED: protein disulfide isomerase-like 2-3 [Jatropha curcas]

Gene co-expression network

sample Hb_000041_300 Hb_000041_300 Hb_022250_100 Hb_022250_100 Hb_000041_300--Hb_022250_100 Hb_000175_630 Hb_000175_630 Hb_000041_300--Hb_000175_630 Hb_004225_040 Hb_004225_040 Hb_000041_300--Hb_004225_040 Hb_000334_170 Hb_000334_170 Hb_000041_300--Hb_000334_170 Hb_026053_040 Hb_026053_040 Hb_000041_300--Hb_026053_040 Hb_000261_050 Hb_000261_050 Hb_000041_300--Hb_000261_050 Hb_006355_020 Hb_006355_020 Hb_022250_100--Hb_006355_020 Hb_000684_350 Hb_000684_350 Hb_022250_100--Hb_000684_350 Hb_000958_070 Hb_000958_070 Hb_022250_100--Hb_000958_070 Hb_005250_010 Hb_005250_010 Hb_022250_100--Hb_005250_010 Hb_000562_050 Hb_000562_050 Hb_022250_100--Hb_000562_050 Hb_001427_210 Hb_001427_210 Hb_000175_630--Hb_001427_210 Hb_000264_180 Hb_000264_180 Hb_000175_630--Hb_000264_180 Hb_000175_630--Hb_000334_170 Hb_003470_070 Hb_003470_070 Hb_000175_630--Hb_003470_070 Hb_012262_040 Hb_012262_040 Hb_000175_630--Hb_012262_040 Hb_000771_170 Hb_000771_170 Hb_004225_040--Hb_000771_170 Hb_001472_160 Hb_001472_160 Hb_004225_040--Hb_001472_160 Hb_004884_180 Hb_004884_180 Hb_004225_040--Hb_004884_180 Hb_000224_220 Hb_000224_220 Hb_004225_040--Hb_000224_220 Hb_001140_180 Hb_001140_180 Hb_004225_040--Hb_001140_180 Hb_002828_060 Hb_002828_060 Hb_004225_040--Hb_002828_060 Hb_000260_560 Hb_000260_560 Hb_000334_170--Hb_000260_560 Hb_001040_070 Hb_001040_070 Hb_000334_170--Hb_001040_070 Hb_001232_100 Hb_001232_100 Hb_000334_170--Hb_001232_100 Hb_000264_230 Hb_000264_230 Hb_000334_170--Hb_000264_230 Hb_000320_470 Hb_000320_470 Hb_026053_040--Hb_000320_470 Hb_017469_110 Hb_017469_110 Hb_026053_040--Hb_017469_110 Hb_000181_100 Hb_000181_100 Hb_026053_040--Hb_000181_100 Hb_001008_070 Hb_001008_070 Hb_026053_040--Hb_001008_070 Hb_000033_110 Hb_000033_110 Hb_026053_040--Hb_000033_110 Hb_013405_080 Hb_013405_080 Hb_026053_040--Hb_013405_080 Hb_001014_100 Hb_001014_100 Hb_000261_050--Hb_001014_100 Hb_032202_220 Hb_032202_220 Hb_000261_050--Hb_032202_220 Hb_000193_330 Hb_000193_330 Hb_000261_050--Hb_000193_330 Hb_005496_050 Hb_005496_050 Hb_000261_050--Hb_005496_050 Hb_001876_040 Hb_001876_040 Hb_000261_050--Hb_001876_040 Hb_002027_080 Hb_002027_080 Hb_000261_050--Hb_002027_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.208295 0.247551 0.451235 0.323519 0.485586 0.166941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.126279 0.0883317 0.169059 0.218927 0.683569

CAGE analysis