Hb_000224_220

Information

Type -
Description -
Location Contig224: 173972-179630
Sequence    

Annotation

kegg
ID pop:POPTR_0014s15820g
description POPTRDRAFT_246818; thioredoxin family protein
nr
ID XP_012080662.1
description PREDICTED: protein disulfide isomerase-like 2-3 [Jatropha curcas]
swissprot
ID Q67UF5
description Protein disulfide isomerase-like 2-3 OS=Oryza sativa subsp. japonica GN=PDIL2-3 PE=2 SV=1
trembl
ID A0A067KF00
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13768 PE=3 SV=1
Gene Ontology
ID GO:0005623
description protein disulfide isomerase-like 2-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23309: 173992-179607 , PASA_asmbl_23311: 179228-179411
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000224_220 0.0 - - PREDICTED: protein disulfide isomerase-like 2-3 [Jatropha curcas]
2 Hb_000302_190 0.0873960312 - - PREDICTED: uncharacterized protein At3g49140-like [Jatropha curcas]
3 Hb_004225_040 0.0885664226 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Populus euphratica]
4 Hb_005701_090 0.0990198759 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_001140_180 0.1067064881 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
6 Hb_000771_170 0.113564051 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
7 Hb_001279_090 0.1141812487 - - PREDICTED: uncharacterized protein LOC105633322 [Jatropha curcas]
8 Hb_001789_160 0.1155870457 - - PREDICTED: putative transporter arsB [Jatropha curcas]
9 Hb_007894_190 0.1172209131 - - PREDICTED: uncharacterized protein LOC105632935 [Jatropha curcas]
10 Hb_000281_070 0.1200441519 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
11 Hb_000562_070 0.1218356732 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
12 Hb_000808_210 0.1224195999 - - hypothetical protein EUTSA_v10023481mg [Eutrema salsugineum]
13 Hb_007576_180 0.1233741479 - - PREDICTED: probable protein phosphatase 2C 62 isoform X5 [Jatropha curcas]
14 Hb_002447_050 0.1238974683 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_003470_070 0.1250808661 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
16 Hb_029552_020 0.1259770654 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001040_070 0.1260659181 - - PREDICTED: uncharacterized protein LOC105649523 [Jatropha curcas]
18 Hb_004884_180 0.1299119659 - - PREDICTED: protein TIC 56, chloroplastic [Jatropha curcas]
19 Hb_000041_300 0.1305672994 transcription factor TF Family: SNF2 PREDICTED: uncharacterized ATP-dependent helicase C23E6.02 isoform X2 [Jatropha curcas]
20 Hb_001053_080 0.1307530802 - - OsCesA3 protein [Morus notabilis]

Gene co-expression network

sample Hb_000224_220 Hb_000224_220 Hb_000302_190 Hb_000302_190 Hb_000224_220--Hb_000302_190 Hb_004225_040 Hb_004225_040 Hb_000224_220--Hb_004225_040 Hb_005701_090 Hb_005701_090 Hb_000224_220--Hb_005701_090 Hb_001140_180 Hb_001140_180 Hb_000224_220--Hb_001140_180 Hb_000771_170 Hb_000771_170 Hb_000224_220--Hb_000771_170 Hb_001279_090 Hb_001279_090 Hb_000224_220--Hb_001279_090 Hb_001789_160 Hb_001789_160 Hb_000302_190--Hb_001789_160 Hb_003071_030 Hb_003071_030 Hb_000302_190--Hb_003071_030 Hb_000302_190--Hb_001279_090 Hb_007594_080 Hb_007594_080 Hb_000302_190--Hb_007594_080 Hb_000808_210 Hb_000808_210 Hb_000302_190--Hb_000808_210 Hb_004225_040--Hb_000771_170 Hb_001472_160 Hb_001472_160 Hb_004225_040--Hb_001472_160 Hb_004884_180 Hb_004884_180 Hb_004225_040--Hb_004884_180 Hb_004225_040--Hb_001140_180 Hb_002828_060 Hb_002828_060 Hb_004225_040--Hb_002828_060 Hb_005701_090--Hb_001140_180 Hb_005701_090--Hb_000302_190 Hb_000300_560 Hb_000300_560 Hb_005701_090--Hb_000300_560 Hb_000878_160 Hb_000878_160 Hb_005701_090--Hb_000878_160 Hb_001789_020 Hb_001789_020 Hb_005701_090--Hb_001789_020 Hb_029552_020 Hb_029552_020 Hb_001140_180--Hb_029552_020 Hb_001140_180--Hb_002828_060 Hb_001279_020 Hb_001279_020 Hb_001140_180--Hb_001279_020 Hb_000562_070 Hb_000562_070 Hb_001140_180--Hb_000562_070 Hb_001053_080 Hb_001053_080 Hb_001140_180--Hb_001053_080 Hb_001411_130 Hb_001411_130 Hb_001140_180--Hb_001411_130 Hb_002600_070 Hb_002600_070 Hb_000771_170--Hb_002600_070 Hb_000771_170--Hb_000562_070 Hb_000771_170--Hb_001472_160 Hb_000771_170--Hb_004884_180 Hb_000482_050 Hb_000482_050 Hb_000771_170--Hb_000482_050 Hb_001279_090--Hb_001053_080 Hb_001279_090--Hb_001279_020 Hb_001279_090--Hb_000808_210 Hb_000358_210 Hb_000358_210 Hb_001279_090--Hb_000358_210 Hb_070624_010 Hb_070624_010 Hb_001279_090--Hb_070624_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.58372 12.4154 34.3762 16.2189 18.7044 8.20542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.88636 2.59201 4.93682 16.2048 41.6561

CAGE analysis