Hb_001789_020

Information

Type -
Description -
Location Contig1789: 26449-54614
Sequence    

Annotation

kegg
ID rcu:RCOM_1583430
description tripeptidyl peptidase II, putative (EC:3.4.14.10)
nr
ID XP_012090248.1
description PREDICTED: tripeptidyl-peptidase 2 isoform X1 [Jatropha curcas]
swissprot
ID F4JVN6
description Tripeptidyl-peptidase 2 OS=Arabidopsis thaliana GN=TPP2 PE=1 SV=1
trembl
ID B9RIX4
description Tripeptidyl peptidase II, putative OS=Ricinus communis GN=RCOM_1583430 PE=4 SV=1
Gene Ontology
ID GO:0005774
description tripeptidyl-peptidase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17182: 26481-44811 , PASA_asmbl_17184: 48444-51041 , PASA_asmbl_17185: 48902-51041 , PASA_asmbl_17186: 48902-51041 , PASA_asmbl_17187: 51466-55489
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001789_020 0.0 - - PREDICTED: tripeptidyl-peptidase 2 isoform X1 [Jatropha curcas]
2 Hb_000562_050 0.0955800214 - - PREDICTED: uncharacterized protein LOC105635369 [Jatropha curcas]
3 Hb_158092_080 0.0997303403 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
4 Hb_003398_100 0.1000932965 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007035_040 0.1030086584 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
6 Hb_000011_270 0.1046555829 - - PREDICTED: pumilio homolog 23 [Jatropha curcas]
7 Hb_005701_090 0.1048861142 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_000320_470 0.1067429683 - - calcium-dependent protein kinase [Hevea brasiliensis]
9 Hb_022250_100 0.1075842206 - - calnexin, putative [Ricinus communis]
10 Hb_001008_050 0.1079657211 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
11 Hb_024570_040 0.1088229619 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
12 Hb_005323_010 0.1092085592 - - PREDICTED: uncharacterized protein LOC105642810 [Jatropha curcas]
13 Hb_007123_050 0.1108701012 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
14 Hb_000820_150 0.1118027486 - - PREDICTED: ACT domain-containing protein ACR9-like [Jatropha curcas]
15 Hb_004306_030 0.113787067 - - PREDICTED: GPI transamidase component PIG-S [Jatropha curcas]
16 Hb_001411_030 0.1157079405 - - hypothetical protein POPTR_0003s09620g [Populus trichocarpa]
17 Hb_073973_150 0.1164807401 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
18 Hb_001194_020 0.1172166606 - - microtubule associated protein xmap215, putative [Ricinus communis]
19 Hb_000826_070 0.1182153542 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003632_030 0.1183329836 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]

Gene co-expression network

sample Hb_001789_020 Hb_001789_020 Hb_000562_050 Hb_000562_050 Hb_001789_020--Hb_000562_050 Hb_158092_080 Hb_158092_080 Hb_001789_020--Hb_158092_080 Hb_003398_100 Hb_003398_100 Hb_001789_020--Hb_003398_100 Hb_007035_040 Hb_007035_040 Hb_001789_020--Hb_007035_040 Hb_000011_270 Hb_000011_270 Hb_001789_020--Hb_000011_270 Hb_005701_090 Hb_005701_090 Hb_001789_020--Hb_005701_090 Hb_156850_090 Hb_156850_090 Hb_000562_050--Hb_156850_090 Hb_022250_010 Hb_022250_010 Hb_000562_050--Hb_022250_010 Hb_001059_130 Hb_001059_130 Hb_000562_050--Hb_001059_130 Hb_033642_060 Hb_033642_060 Hb_000562_050--Hb_033642_060 Hb_006355_020 Hb_006355_020 Hb_000562_050--Hb_006355_020 Hb_007123_050 Hb_007123_050 Hb_158092_080--Hb_007123_050 Hb_002475_040 Hb_002475_040 Hb_158092_080--Hb_002475_040 Hb_004064_050 Hb_004064_050 Hb_158092_080--Hb_004064_050 Hb_000284_230 Hb_000284_230 Hb_158092_080--Hb_000284_230 Hb_007894_160 Hb_007894_160 Hb_158092_080--Hb_007894_160 Hb_000608_300 Hb_000608_300 Hb_158092_080--Hb_000608_300 Hb_000820_150 Hb_000820_150 Hb_003398_100--Hb_000820_150 Hb_033642_040 Hb_033642_040 Hb_003398_100--Hb_033642_040 Hb_003104_040 Hb_003104_040 Hb_003398_100--Hb_003104_040 Hb_002784_030 Hb_002784_030 Hb_003398_100--Hb_002784_030 Hb_073973_150 Hb_073973_150 Hb_003398_100--Hb_073973_150 Hb_000245_150 Hb_000245_150 Hb_007035_040--Hb_000245_150 Hb_000320_470 Hb_000320_470 Hb_007035_040--Hb_000320_470 Hb_002233_130 Hb_002233_130 Hb_007035_040--Hb_002233_130 Hb_000331_130 Hb_000331_130 Hb_007035_040--Hb_000331_130 Hb_004884_180 Hb_004884_180 Hb_007035_040--Hb_004884_180 Hb_001008_050 Hb_001008_050 Hb_007035_040--Hb_001008_050 Hb_003093_040 Hb_003093_040 Hb_000011_270--Hb_003093_040 Hb_001221_180 Hb_001221_180 Hb_000011_270--Hb_001221_180 Hb_000568_050 Hb_000568_050 Hb_000011_270--Hb_000568_050 Hb_000175_410 Hb_000175_410 Hb_000011_270--Hb_000175_410 Hb_002357_070 Hb_002357_070 Hb_000011_270--Hb_002357_070 Hb_000001_170 Hb_000001_170 Hb_000011_270--Hb_000001_170 Hb_001140_180 Hb_001140_180 Hb_005701_090--Hb_001140_180 Hb_000224_220 Hb_000224_220 Hb_005701_090--Hb_000224_220 Hb_000302_190 Hb_000302_190 Hb_005701_090--Hb_000302_190 Hb_000300_560 Hb_000300_560 Hb_005701_090--Hb_000300_560 Hb_000878_160 Hb_000878_160 Hb_005701_090--Hb_000878_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.1427 14.1943 24.4565 19.1146 18.8461 18.2201
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.77875 4.02632 4.68857 27.5762 35.1068

CAGE analysis