Hb_003071_030

Information

Type -
Description -
Location Contig3071: 34125-36273
Sequence    

Annotation

kegg
ID rcu:RCOM_0710470
description groes chaperonin, putative
nr
ID XP_012077092.1
description PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
swissprot
ID O65282
description 20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2
trembl
ID A0A067KG15
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07519 PE=3 SV=1
Gene Ontology
ID GO:0005739
description 20 kda chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32443: 34169-36198 , PASA_asmbl_32444: 34169-36160
cDNA
(Sanger)
(ID:Location)		 001_J03.ab1: 34510-36198 , 028_G12.ab1: 34645-36191 , 053_K02.ab1: 34785-36198

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003071_030 0.0 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
2 Hb_010620_050 0.0706020186 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
3 Hb_002107_050 0.0748570734 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
4 Hb_001789_160 0.0752436337 - - PREDICTED: putative transporter arsB [Jatropha curcas]
5 Hb_000302_190 0.0807867305 - - PREDICTED: uncharacterized protein At3g49140-like [Jatropha curcas]
6 Hb_000327_330 0.0839710406 - - conserved hypothetical protein [Ricinus communis]
7 Hb_012779_080 0.0843761451 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
8 Hb_001623_490 0.0876231304 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
9 Hb_000300_560 0.0935140376 - - PREDICTED: probable glycosyltransferase At5g03795 isoform X1 [Jatropha curcas]
10 Hb_002218_020 0.0954399837 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
11 Hb_005235_070 0.09546627 - - PREDICTED: plastid lipid-associated protein 3, chloroplastic [Jatropha curcas]
12 Hb_021596_020 0.0965410845 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
13 Hb_009288_040 0.0967476167 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
14 Hb_000748_090 0.0971524262 - - glucose inhibited division protein A, putative [Ricinus communis]
15 Hb_000094_100 0.0982396621 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
16 Hb_000482_050 0.0987995069 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
17 Hb_000826_030 0.0999242795 - - PREDICTED: putative tRNA pseudouridine synthase isoform X1 [Jatropha curcas]
18 Hb_000260_710 0.101494652 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
19 Hb_010174_090 0.1016699371 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
20 Hb_000562_070 0.1017640339 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003071_030 Hb_003071_030 Hb_010620_050 Hb_010620_050 Hb_003071_030--Hb_010620_050 Hb_002107_050 Hb_002107_050 Hb_003071_030--Hb_002107_050 Hb_001789_160 Hb_001789_160 Hb_003071_030--Hb_001789_160 Hb_000302_190 Hb_000302_190 Hb_003071_030--Hb_000302_190 Hb_000327_330 Hb_000327_330 Hb_003071_030--Hb_000327_330 Hb_012779_080 Hb_012779_080 Hb_003071_030--Hb_012779_080 Hb_010620_050--Hb_002107_050 Hb_010620_050--Hb_012779_080 Hb_160271_010 Hb_160271_010 Hb_010620_050--Hb_160271_010 Hb_138585_030 Hb_138585_030 Hb_010620_050--Hb_138585_030 Hb_009288_040 Hb_009288_040 Hb_010620_050--Hb_009288_040 Hb_003883_010 Hb_003883_010 Hb_002107_050--Hb_003883_010 Hb_002107_050--Hb_160271_010 Hb_005235_070 Hb_005235_070 Hb_002107_050--Hb_005235_070 Hb_002107_050--Hb_012779_080 Hb_000094_100 Hb_000094_100 Hb_001789_160--Hb_000094_100 Hb_031042_060 Hb_031042_060 Hb_001789_160--Hb_031042_060 Hb_001789_160--Hb_000302_190 Hb_000613_120 Hb_000613_120 Hb_001789_160--Hb_000613_120 Hb_000260_710 Hb_000260_710 Hb_001789_160--Hb_000260_710 Hb_001279_090 Hb_001279_090 Hb_000302_190--Hb_001279_090 Hb_000224_220 Hb_000224_220 Hb_000302_190--Hb_000224_220 Hb_007594_080 Hb_007594_080 Hb_000302_190--Hb_007594_080 Hb_000808_210 Hb_000808_210 Hb_000302_190--Hb_000808_210 Hb_000318_220 Hb_000318_220 Hb_000327_330--Hb_000318_220 Hb_003687_080 Hb_003687_080 Hb_000327_330--Hb_003687_080 Hb_001623_490 Hb_001623_490 Hb_000327_330--Hb_001623_490 Hb_000086_270 Hb_000086_270 Hb_000327_330--Hb_000086_270 Hb_002218_020 Hb_002218_020 Hb_000327_330--Hb_002218_020 Hb_005665_090 Hb_005665_090 Hb_012779_080--Hb_005665_090 Hb_000320_190 Hb_000320_190 Hb_012779_080--Hb_000320_190 Hb_012779_080--Hb_001623_490 Hb_002915_010 Hb_002915_010 Hb_012779_080--Hb_002915_010 Hb_012779_080--Hb_009288_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.4661 95.6599 249.911 121.908 85.8217 58.794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.6297 67.399 34.7965 75.1389 214.007

CAGE analysis