Hb_000260_710

Information

Type -
Description -
Location Contig260: 538931-549003
Sequence    

Annotation

kegg
ID mdm:103440006
description uncharacterized LOC103440006
nr
ID XP_012090924.1
description PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
swissprot
ID Q9SYH1
description Probable GTP diphosphokinase RSH3, chloroplastic OS=Arabidopsis thaliana GN=RSH3 PE=2 SV=1
trembl
ID D7T7R8
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0039g02260 PE=4 SV=1
Gene Ontology
ID GO:0008728
description guanosine-3 -bis 3 -pyrophosphohydrolase isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27052: 539043-542474 , PASA_asmbl_27053: 542668-543991 , PASA_asmbl_27054: 544271-545106 , PASA_asmbl_27055: 545132-548492 , PASA_asmbl_27056: 548519-548787
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_710 0.0 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
2 Hb_004871_010 0.078972994 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
3 Hb_031042_060 0.0811919231 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
4 Hb_001789_160 0.0820925337 - - PREDICTED: putative transporter arsB [Jatropha curcas]
5 Hb_003462_060 0.0860934677 - - PREDICTED: ABC transporter G family member 24-like [Jatropha curcas]
6 Hb_001472_160 0.0893532499 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
7 Hb_011861_050 0.0897785895 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
8 Hb_002928_030 0.0919883127 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
9 Hb_000358_040 0.092005405 - - PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic [Jatropha curcas]
10 Hb_004629_030 0.0958547922 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_002107_050 0.0964350524 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
12 Hb_010620_050 0.0971047911 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
13 Hb_000309_020 0.0973482325 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
14 Hb_012779_080 0.0981656209 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
15 Hb_002600_070 0.0995059957 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
16 Hb_006911_070 0.100071894 - - 50S ribosomal protein L1p, putative [Ricinus communis]
17 Hb_003071_030 0.101494652 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
18 Hb_000108_020 0.1016204772 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
19 Hb_009288_040 0.1017778307 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
20 Hb_000482_050 0.1021014414 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000260_710 Hb_000260_710 Hb_004871_010 Hb_004871_010 Hb_000260_710--Hb_004871_010 Hb_031042_060 Hb_031042_060 Hb_000260_710--Hb_031042_060 Hb_001789_160 Hb_001789_160 Hb_000260_710--Hb_001789_160 Hb_003462_060 Hb_003462_060 Hb_000260_710--Hb_003462_060 Hb_001472_160 Hb_001472_160 Hb_000260_710--Hb_001472_160 Hb_011861_050 Hb_011861_050 Hb_000260_710--Hb_011861_050 Hb_003376_390 Hb_003376_390 Hb_004871_010--Hb_003376_390 Hb_000976_190 Hb_000976_190 Hb_004871_010--Hb_000976_190 Hb_006787_090 Hb_006787_090 Hb_004871_010--Hb_006787_090 Hb_002928_030 Hb_002928_030 Hb_004871_010--Hb_002928_030 Hb_001959_060 Hb_001959_060 Hb_004871_010--Hb_001959_060 Hb_031042_060--Hb_001789_160 Hb_004884_180 Hb_004884_180 Hb_031042_060--Hb_004884_180 Hb_000363_060 Hb_000363_060 Hb_031042_060--Hb_000363_060 Hb_010174_090 Hb_010174_090 Hb_031042_060--Hb_010174_090 Hb_021650_010 Hb_021650_010 Hb_031042_060--Hb_021650_010 Hb_003071_030 Hb_003071_030 Hb_001789_160--Hb_003071_030 Hb_000094_100 Hb_000094_100 Hb_001789_160--Hb_000094_100 Hb_000302_190 Hb_000302_190 Hb_001789_160--Hb_000302_190 Hb_000613_120 Hb_000613_120 Hb_001789_160--Hb_000613_120 Hb_000482_050 Hb_000482_050 Hb_003462_060--Hb_000482_050 Hb_002600_070 Hb_002600_070 Hb_003462_060--Hb_002600_070 Hb_022693_130 Hb_022693_130 Hb_003462_060--Hb_022693_130 Hb_001396_240 Hb_001396_240 Hb_003462_060--Hb_001396_240 Hb_000529_130 Hb_000529_130 Hb_003462_060--Hb_000529_130 Hb_025477_050 Hb_025477_050 Hb_001472_160--Hb_025477_050 Hb_001472_160--Hb_004884_180 Hb_000220_210 Hb_000220_210 Hb_001472_160--Hb_000220_210 Hb_004225_040 Hb_004225_040 Hb_001472_160--Hb_004225_040 Hb_000309_020 Hb_000309_020 Hb_001472_160--Hb_000309_020 Hb_002973_110 Hb_002973_110 Hb_001472_160--Hb_002973_110 Hb_000480_040 Hb_000480_040 Hb_011861_050--Hb_000480_040 Hb_000144_060 Hb_000144_060 Hb_011861_050--Hb_000144_060 Hb_000345_370 Hb_000345_370 Hb_011861_050--Hb_000345_370 Hb_011861_050--Hb_000309_020 Hb_000941_100 Hb_000941_100 Hb_011861_050--Hb_000941_100 Hb_005147_080 Hb_005147_080 Hb_011861_050--Hb_005147_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.23977 7.36969 19.1405 9.28809 6.15074 7.13181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.48493 3.73365 3.41644 4.25665 24.2021

CAGE analysis