Hb_001396_240

Information

Type transcription factor
Description TF Family: Orphans
Location Contig1396: 162078-169489
Sequence    

Annotation

kegg
ID rcu:RCOM_1079740
description histidine kinase 1, 2, 3 plant, putative (EC:2.7.13.3)
nr
ID XP_012085699.1
description PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
swissprot
ID Q9C5U1
description Histidine kinase 3 OS=Arabidopsis thaliana GN=AHK3 PE=1 SV=1
trembl
ID A0A067JSG4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17975 PE=4 SV=1
Gene Ontology
ID GO:0005622
description histidine kinase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10764: 162151-169938 , PASA_asmbl_10765: 162156-169795 , PASA_asmbl_10766: 168140-169938
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001396_240 0.0 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
2 Hb_003462_060 0.0892330796 - - PREDICTED: ABC transporter G family member 24-like [Jatropha curcas]
3 Hb_010344_030 0.1063868741 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004994_350 0.1078969948 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
5 Hb_004466_050 0.1082018112 - - PREDICTED: uncharacterized protein LOC105649250, partial [Jatropha curcas]
6 Hb_052128_010 0.1082943658 - - PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Nicotiana sylvestris]
7 Hb_005250_010 0.1088620475 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
8 Hb_001408_030 0.1102552606 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
9 Hb_000453_030 0.1103157332 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
10 Hb_000320_470 0.1119742499 - - calcium-dependent protein kinase [Hevea brasiliensis]
11 Hb_000771_170 0.1129830928 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
12 Hb_001008_050 0.1148962675 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
13 Hb_000529_130 0.1153566844 - - hypothetical protein POPTR_0007s14320g [Populus trichocarpa]
14 Hb_002973_110 0.1162330863 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_002600_070 0.1173459328 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
16 Hb_089246_010 0.1186374982 - - hypothetical protein JCGZ_24395 [Jatropha curcas]
17 Hb_001140_180 0.1199906284 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
18 Hb_001396_020 0.1203530919 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
19 Hb_022250_100 0.1214425828 - - calnexin, putative [Ricinus communis]
20 Hb_000815_230 0.1224372286 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001396_240 Hb_001396_240 Hb_003462_060 Hb_003462_060 Hb_001396_240--Hb_003462_060 Hb_010344_030 Hb_010344_030 Hb_001396_240--Hb_010344_030 Hb_004994_350 Hb_004994_350 Hb_001396_240--Hb_004994_350 Hb_004466_050 Hb_004466_050 Hb_001396_240--Hb_004466_050 Hb_052128_010 Hb_052128_010 Hb_001396_240--Hb_052128_010 Hb_005250_010 Hb_005250_010 Hb_001396_240--Hb_005250_010 Hb_000482_050 Hb_000482_050 Hb_003462_060--Hb_000482_050 Hb_000260_710 Hb_000260_710 Hb_003462_060--Hb_000260_710 Hb_002600_070 Hb_002600_070 Hb_003462_060--Hb_002600_070 Hb_022693_130 Hb_022693_130 Hb_003462_060--Hb_022693_130 Hb_000529_130 Hb_000529_130 Hb_003462_060--Hb_000529_130 Hb_006006_060 Hb_006006_060 Hb_010344_030--Hb_006006_060 Hb_010344_030--Hb_005250_010 Hb_000200_350 Hb_000200_350 Hb_010344_030--Hb_000200_350 Hb_000388_150 Hb_000388_150 Hb_010344_030--Hb_000388_150 Hb_004735_020 Hb_004735_020 Hb_010344_030--Hb_004735_020 Hb_010344_030--Hb_003462_060 Hb_004994_350--Hb_000529_130 Hb_029552_020 Hb_029552_020 Hb_004994_350--Hb_029552_020 Hb_001178_030 Hb_001178_030 Hb_004994_350--Hb_001178_030 Hb_001396_020 Hb_001396_020 Hb_004994_350--Hb_001396_020 Hb_004994_350--Hb_002600_070 Hb_000748_090 Hb_000748_090 Hb_004994_350--Hb_000748_090 Hb_004466_050--Hb_052128_010 Hb_001408_030 Hb_001408_030 Hb_004466_050--Hb_001408_030 Hb_008092_060 Hb_008092_060 Hb_004466_050--Hb_008092_060 Hb_015531_030 Hb_015531_030 Hb_004466_050--Hb_015531_030 Hb_164926_010 Hb_164926_010 Hb_004466_050--Hb_164926_010 Hb_054865_020 Hb_054865_020 Hb_052128_010--Hb_054865_020 Hb_052128_010--Hb_001396_020 Hb_002307_080 Hb_002307_080 Hb_052128_010--Hb_002307_080 Hb_000453_030 Hb_000453_030 Hb_052128_010--Hb_000453_030 Hb_013405_080 Hb_013405_080 Hb_005250_010--Hb_013405_080 Hb_025477_050 Hb_025477_050 Hb_005250_010--Hb_025477_050 Hb_005914_040 Hb_005914_040 Hb_005250_010--Hb_005914_040 Hb_004218_190 Hb_004218_190 Hb_005250_010--Hb_004218_190 Hb_026053_040 Hb_026053_040 Hb_005250_010--Hb_026053_040 Hb_000033_110 Hb_000033_110 Hb_005250_010--Hb_000033_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4154 12.1509 18.0632 14.5701 7.31016 13.8488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.07035 2.33708 4.99484 9.23191 30.5017

CAGE analysis