Hb_164926_010

Information

Type -
Description -
Location Contig164926: 4566-8198
Sequence    

Annotation

kegg
ID tcc:TCM_015612
description UDP-Glycosyltransferase superfamily protein isoform 1
nr
ID KHG13843.1
description Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
swissprot
ID Q9MAQ0
description Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=GBSS1 PE=1 SV=1
trembl
ID A0A0B0NH38
description Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Gossypium arboreum GN=F383_17697 PE=4 SV=1
Gene Ontology
ID GO:0009536
description granule-bound starch synthase chloroplastic amyloplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15158: 4166-8188 , PASA_asmbl_15159: 6875-8188
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_164926_010 0.0 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
2 Hb_000803_220 0.0872288417 - - PREDICTED: magnesium-chelatase subunit ChlD, chloroplastic [Jatropha curcas]
3 Hb_007894_190 0.1030333811 - - PREDICTED: uncharacterized protein LOC105632935 [Jatropha curcas]
4 Hb_002005_040 0.1082954055 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_005618_150 0.1092296431 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]
6 Hb_004837_210 0.1096909609 - - PREDICTED: calcium-dependent protein kinase 8-like [Jatropha curcas]
7 Hb_007576_180 0.1165545744 - - PREDICTED: probable protein phosphatase 2C 62 isoform X5 [Jatropha curcas]
8 Hb_000358_040 0.117342644 - - PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic [Jatropha curcas]
9 Hb_010984_010 0.1179320393 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_001348_090 0.1219658585 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
11 Hb_004710_020 0.1231553625 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
12 Hb_005116_100 0.1248999061 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
13 Hb_000260_710 0.1259739095 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
14 Hb_006916_030 0.1279205438 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
15 Hb_004055_160 0.12898551 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
16 Hb_002928_030 0.1292690811 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
17 Hb_008092_050 0.1293949217 - - PREDICTED: uncharacterized protein LOC105142434 [Populus euphratica]
18 Hb_000665_270 0.1297708041 - - PREDICTED: adenine phosphoribosyltransferase 5 [Jatropha curcas]
19 Hb_001597_020 0.130802628 - - PREDICTED: uncharacterized protein LOC105629846 isoform X2 [Jatropha curcas]
20 Hb_001408_030 0.1313272561 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_164926_010 Hb_164926_010 Hb_000803_220 Hb_000803_220 Hb_164926_010--Hb_000803_220 Hb_007894_190 Hb_007894_190 Hb_164926_010--Hb_007894_190 Hb_002005_040 Hb_002005_040 Hb_164926_010--Hb_002005_040 Hb_005618_150 Hb_005618_150 Hb_164926_010--Hb_005618_150 Hb_004837_210 Hb_004837_210 Hb_164926_010--Hb_004837_210 Hb_007576_180 Hb_007576_180 Hb_164926_010--Hb_007576_180 Hb_000803_220--Hb_007576_180 Hb_010984_010 Hb_010984_010 Hb_000803_220--Hb_010984_010 Hb_000803_240 Hb_000803_240 Hb_000803_220--Hb_000803_240 Hb_001425_010 Hb_001425_010 Hb_000803_220--Hb_001425_010 Hb_018043_020 Hb_018043_020 Hb_000803_220--Hb_018043_020 Hb_000224_220 Hb_000224_220 Hb_007894_190--Hb_000224_220 Hb_007894_190--Hb_000803_220 Hb_001689_050 Hb_001689_050 Hb_007894_190--Hb_001689_050 Hb_000009_020 Hb_000009_020 Hb_007894_190--Hb_000009_020 Hb_150651_020 Hb_150651_020 Hb_007894_190--Hb_150651_020 Hb_004055_160 Hb_004055_160 Hb_002005_040--Hb_004055_160 Hb_001348_090 Hb_001348_090 Hb_002005_040--Hb_001348_090 Hb_005116_100 Hb_005116_100 Hb_002005_040--Hb_005116_100 Hb_002044_160 Hb_002044_160 Hb_002005_040--Hb_002044_160 Hb_000684_430 Hb_000684_430 Hb_002005_040--Hb_000684_430 Hb_001269_500 Hb_001269_500 Hb_002005_040--Hb_001269_500 Hb_001907_070 Hb_001907_070 Hb_005618_150--Hb_001907_070 Hb_008092_050 Hb_008092_050 Hb_005618_150--Hb_008092_050 Hb_001723_030 Hb_001723_030 Hb_005618_150--Hb_001723_030 Hb_006062_030 Hb_006062_030 Hb_005618_150--Hb_006062_030 Hb_004871_010 Hb_004871_010 Hb_005618_150--Hb_004871_010 Hb_148146_010 Hb_148146_010 Hb_004837_210--Hb_148146_010 Hb_003683_030 Hb_003683_030 Hb_004837_210--Hb_003683_030 Hb_000094_100 Hb_000094_100 Hb_004837_210--Hb_000094_100 Hb_012779_080 Hb_012779_080 Hb_004837_210--Hb_012779_080 Hb_002928_030 Hb_002928_030 Hb_004837_210--Hb_002928_030 Hb_005074_050 Hb_005074_050 Hb_004837_210--Hb_005074_050 Hb_007576_180--Hb_010984_010 Hb_004629_030 Hb_004629_030 Hb_007576_180--Hb_004629_030 Hb_004837_020 Hb_004837_020 Hb_007576_180--Hb_004837_020 Hb_007576_180--Hb_001425_010 Hb_007576_180--Hb_018043_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.1488 15.2789 49.718 25.39 11.99 15.3233
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.7051 3.81367 2.60753 16.0598 72.1312

CAGE analysis