Hb_005618_150

Information

Type -
Description -
Location Contig5618: 123625-131634
Sequence    

Annotation

kegg
ID pmum:103327255
description protein translocase subunit SecA, chloroplastic
nr
ID XP_012083011.1
description PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]
swissprot
ID Q9SYI0
description Protein translocase subunit SECA1, chloroplastic OS=Arabidopsis thaliana GN=SECA1 PE=2 SV=2
trembl
ID M5X992
description Protein translocase subunit SecA OS=Prunus persica GN=PRUPE_ppa000841mg PE=3 SV=1
Gene Ontology
ID GO:0016020
description protein translocase subunit chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48840: 124526-124900 , PASA_asmbl_48841: 123788-126732
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005618_150 0.0 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]
2 Hb_001907_070 0.0769170998 - - 50S ribosomal protein L1p, putative [Ricinus communis]
3 Hb_008092_050 0.1049090174 - - PREDICTED: uncharacterized protein LOC105142434 [Populus euphratica]
4 Hb_164926_010 0.1092296431 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
5 Hb_001723_030 0.1108423074 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
6 Hb_006062_030 0.1108907464 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
7 Hb_004871_010 0.1109349509 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
8 Hb_006911_070 0.1121206922 - - 50S ribosomal protein L1p, putative [Ricinus communis]
9 Hb_000260_710 0.112180103 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
10 Hb_002005_040 0.1147858568 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_000684_430 0.1152850628 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
12 Hb_001408_030 0.1157856425 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
13 Hb_005063_080 0.1168791936 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
14 Hb_002928_030 0.1184060604 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
15 Hb_004055_160 0.1224506834 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
16 Hb_000803_240 0.1227792348 - - hypothetical protein CICLE_v100143612mg, partial [Citrus clementina]
17 Hb_014361_110 0.1232965849 - - RNA binding protein, putative [Ricinus communis]
18 Hb_002016_010 0.1274771731 - - PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Jatropha curcas]
19 Hb_003376_390 0.1275189093 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
20 Hb_000665_270 0.128138821 - - PREDICTED: adenine phosphoribosyltransferase 5 [Jatropha curcas]

Gene co-expression network

sample Hb_005618_150 Hb_005618_150 Hb_001907_070 Hb_001907_070 Hb_005618_150--Hb_001907_070 Hb_008092_050 Hb_008092_050 Hb_005618_150--Hb_008092_050 Hb_164926_010 Hb_164926_010 Hb_005618_150--Hb_164926_010 Hb_001723_030 Hb_001723_030 Hb_005618_150--Hb_001723_030 Hb_006062_030 Hb_006062_030 Hb_005618_150--Hb_006062_030 Hb_004871_010 Hb_004871_010 Hb_005618_150--Hb_004871_010 Hb_006911_070 Hb_006911_070 Hb_001907_070--Hb_006911_070 Hb_005038_030 Hb_005038_030 Hb_001907_070--Hb_005038_030 Hb_000023_370 Hb_000023_370 Hb_001907_070--Hb_000023_370 Hb_001907_070--Hb_004871_010 Hb_001907_070--Hb_001723_030 Hb_001408_030 Hb_001408_030 Hb_008092_050--Hb_001408_030 Hb_008092_060 Hb_008092_060 Hb_008092_050--Hb_008092_060 Hb_001307_040 Hb_001307_040 Hb_008092_050--Hb_001307_040 Hb_001437_120 Hb_001437_120 Hb_008092_050--Hb_001437_120 Hb_008092_050--Hb_006911_070 Hb_000803_220 Hb_000803_220 Hb_164926_010--Hb_000803_220 Hb_007894_190 Hb_007894_190 Hb_164926_010--Hb_007894_190 Hb_002005_040 Hb_002005_040 Hb_164926_010--Hb_002005_040 Hb_004837_210 Hb_004837_210 Hb_164926_010--Hb_004837_210 Hb_007576_180 Hb_007576_180 Hb_164926_010--Hb_007576_180 Hb_002217_140 Hb_002217_140 Hb_001723_030--Hb_002217_140 Hb_000803_240 Hb_000803_240 Hb_001723_030--Hb_000803_240 Hb_000309_020 Hb_000309_020 Hb_001723_030--Hb_000309_020 Hb_016461_030 Hb_016461_030 Hb_001723_030--Hb_016461_030 Hb_002027_410 Hb_002027_410 Hb_001723_030--Hb_002027_410 Hb_000684_430 Hb_000684_430 Hb_001723_030--Hb_000684_430 Hb_000537_070 Hb_000537_070 Hb_006062_030--Hb_000537_070 Hb_000661_090 Hb_000661_090 Hb_006062_030--Hb_000661_090 Hb_000053_120 Hb_000053_120 Hb_006062_030--Hb_000053_120 Hb_006062_030--Hb_001723_030 Hb_003777_020 Hb_003777_020 Hb_006062_030--Hb_003777_020 Hb_003376_390 Hb_003376_390 Hb_004871_010--Hb_003376_390 Hb_000260_710 Hb_000260_710 Hb_004871_010--Hb_000260_710 Hb_000976_190 Hb_000976_190 Hb_004871_010--Hb_000976_190 Hb_006787_090 Hb_006787_090 Hb_004871_010--Hb_006787_090 Hb_002928_030 Hb_002928_030 Hb_004871_010--Hb_002928_030 Hb_001959_060 Hb_001959_060 Hb_004871_010--Hb_001959_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.36244 7.94985 26.7354 10.8826 10.3723 9.02748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.01335 3.09311 2.50232 4.56635 47.5196

CAGE analysis