Hb_001907_070

Information

Type -
Description -
Location Contig1907: 152342-156899
Sequence    

Annotation

kegg
ID rcu:RCOM_0963900
description 50S ribosomal protein L1p, putative
nr
ID XP_002517771.1
description 50S ribosomal protein L1p, putative [Ricinus communis]
swissprot
ID Q9LY66
description 50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1
trembl
ID B9RVK2
description Ribosomal protein OS=Ricinus communis GN=RCOM_0963900 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19015: 152351-154514 , PASA_asmbl_19016: 156014-156854
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001907_070 0.0 - - 50S ribosomal protein L1p, putative [Ricinus communis]
2 Hb_005618_150 0.0769170998 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]
3 Hb_006911_070 0.0974273051 - - 50S ribosomal protein L1p, putative [Ricinus communis]
4 Hb_005038_030 0.1019907536 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
5 Hb_000023_370 0.1058851564 - - -
6 Hb_004871_010 0.1082298068 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
7 Hb_001723_030 0.1100342308 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
8 Hb_000684_430 0.1138956705 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
9 Hb_000260_710 0.1157307943 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
10 Hb_001220_050 0.1177152335 - - DNA-damage-inducible protein f, putative [Ricinus communis]
11 Hb_005063_080 0.1227346685 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
12 Hb_001352_080 0.1242734078 - - PREDICTED: uncharacterized protein At5g02240 [Jatropha curcas]
13 Hb_002217_140 0.1298260117 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Nelumbo nucifera]
14 Hb_006198_130 0.1300444649 - - PREDICTED: uncharacterized protein LOC105644406 [Jatropha curcas]
15 Hb_000802_050 0.1345962675 transcription factor TF Family: TCP PREDICTED: transcription factor TCP2-like [Jatropha curcas]
16 Hb_001959_240 0.134959384 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Jatropha curcas]
17 Hb_002016_010 0.1375825566 - - PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Jatropha curcas]
18 Hb_000309_020 0.1384198563 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
19 Hb_000976_190 0.1390001602 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
20 Hb_001789_160 0.1392554362 - - PREDICTED: putative transporter arsB [Jatropha curcas]

Gene co-expression network

sample Hb_001907_070 Hb_001907_070 Hb_005618_150 Hb_005618_150 Hb_001907_070--Hb_005618_150 Hb_006911_070 Hb_006911_070 Hb_001907_070--Hb_006911_070 Hb_005038_030 Hb_005038_030 Hb_001907_070--Hb_005038_030 Hb_000023_370 Hb_000023_370 Hb_001907_070--Hb_000023_370 Hb_004871_010 Hb_004871_010 Hb_001907_070--Hb_004871_010 Hb_001723_030 Hb_001723_030 Hb_001907_070--Hb_001723_030 Hb_008092_050 Hb_008092_050 Hb_005618_150--Hb_008092_050 Hb_164926_010 Hb_164926_010 Hb_005618_150--Hb_164926_010 Hb_005618_150--Hb_001723_030 Hb_006062_030 Hb_006062_030 Hb_005618_150--Hb_006062_030 Hb_005618_150--Hb_004871_010 Hb_000260_710 Hb_000260_710 Hb_006911_070--Hb_000260_710 Hb_001959_240 Hb_001959_240 Hb_006911_070--Hb_001959_240 Hb_031042_060 Hb_031042_060 Hb_006911_070--Hb_031042_060 Hb_000302_190 Hb_000302_190 Hb_006911_070--Hb_000302_190 Hb_006911_070--Hb_005618_150 Hb_001352_080 Hb_001352_080 Hb_005038_030--Hb_001352_080 Hb_004846_050 Hb_004846_050 Hb_005038_030--Hb_004846_050 Hb_005038_030--Hb_005618_150 Hb_005038_030--Hb_006911_070 Hb_002016_010 Hb_002016_010 Hb_005038_030--Hb_002016_010 Hb_002053_110 Hb_002053_110 Hb_000023_370--Hb_002053_110 Hb_000363_060 Hb_000363_060 Hb_000023_370--Hb_000363_060 Hb_001220_050 Hb_001220_050 Hb_000023_370--Hb_001220_050 Hb_000023_370--Hb_006911_070 Hb_000023_370--Hb_005618_150 Hb_003376_390 Hb_003376_390 Hb_004871_010--Hb_003376_390 Hb_004871_010--Hb_000260_710 Hb_000976_190 Hb_000976_190 Hb_004871_010--Hb_000976_190 Hb_006787_090 Hb_006787_090 Hb_004871_010--Hb_006787_090 Hb_002928_030 Hb_002928_030 Hb_004871_010--Hb_002928_030 Hb_001959_060 Hb_001959_060 Hb_004871_010--Hb_001959_060 Hb_002217_140 Hb_002217_140 Hb_001723_030--Hb_002217_140 Hb_000803_240 Hb_000803_240 Hb_001723_030--Hb_000803_240 Hb_000309_020 Hb_000309_020 Hb_001723_030--Hb_000309_020 Hb_016461_030 Hb_016461_030 Hb_001723_030--Hb_016461_030 Hb_002027_410 Hb_002027_410 Hb_001723_030--Hb_002027_410 Hb_000684_430 Hb_000684_430 Hb_001723_030--Hb_000684_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.09586 6.44374 36.959 13.2878 15.3973 12.024
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.21962 5.47878 5.72429 4.44504 53.7748

CAGE analysis