Hb_002016_010

Information

Type -
Description -
Location Contig2016: 30416-34399
Sequence    

Annotation

kegg
ID vvi:100245310
description protein LOW PSII ACCUMULATION 1, chloroplastic
nr
ID XP_012082725.1
description PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Jatropha curcas]
swissprot
ID Q9SRY4
description Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana GN=LPA1 PE=1 SV=1
trembl
ID A0A067JW53
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13903 PE=4 SV=1
Gene Ontology
ID GO:0009507
description protein low psii accumulation chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20487: 33656-33986 , PASA_asmbl_20488: 31037-34350 , PASA_asmbl_20489: 31964-34209 , PASA_asmbl_20490: 32107-32359
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002016_010 0.0 - - PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Jatropha curcas]
2 Hb_003529_140 0.1149918876 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
3 Hb_000363_060 0.116050994 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
4 Hb_006569_040 0.1182326445 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
5 Hb_006787_090 0.1186050248 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
6 Hb_010174_090 0.1203286297 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
7 Hb_004871_010 0.1223687207 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
8 Hb_031042_060 0.1235978136 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
9 Hb_001472_160 0.1252196217 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
10 Hb_000260_710 0.1265466161 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
11 Hb_000220_210 0.1272712365 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
12 Hb_005618_150 0.1274771731 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]
13 Hb_006911_070 0.1281830018 - - 50S ribosomal protein L1p, putative [Ricinus communis]
14 Hb_000144_060 0.1290937596 - - PREDICTED: uncharacterized protein At5g03900, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_001623_130 0.1311827675 - - PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_000309_020 0.1319747592 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
17 Hb_000613_120 0.1320473347 transcription factor TF Family: SET PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
18 Hb_001828_120 0.1321258206 - - PREDICTED: uncharacterized protein LOC105140167 [Populus euphratica]
19 Hb_003752_070 0.1342904733 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
20 Hb_004884_180 0.1353432121 - - PREDICTED: protein TIC 56, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002016_010 Hb_002016_010 Hb_003529_140 Hb_003529_140 Hb_002016_010--Hb_003529_140 Hb_000363_060 Hb_000363_060 Hb_002016_010--Hb_000363_060 Hb_006569_040 Hb_006569_040 Hb_002016_010--Hb_006569_040 Hb_006787_090 Hb_006787_090 Hb_002016_010--Hb_006787_090 Hb_010174_090 Hb_010174_090 Hb_002016_010--Hb_010174_090 Hb_004871_010 Hb_004871_010 Hb_002016_010--Hb_004871_010 Hb_003529_140--Hb_006569_040 Hb_003529_140--Hb_010174_090 Hb_001828_120 Hb_001828_120 Hb_003529_140--Hb_001828_120 Hb_002600_070 Hb_002600_070 Hb_003529_140--Hb_002600_070 Hb_000555_020 Hb_000555_020 Hb_003529_140--Hb_000555_020 Hb_000311_120 Hb_000311_120 Hb_003529_140--Hb_000311_120 Hb_001660_120 Hb_001660_120 Hb_000363_060--Hb_001660_120 Hb_025477_050 Hb_025477_050 Hb_000363_060--Hb_025477_050 Hb_031042_060 Hb_031042_060 Hb_000363_060--Hb_031042_060 Hb_001472_160 Hb_001472_160 Hb_000363_060--Hb_001472_160 Hb_000331_130 Hb_000331_130 Hb_000363_060--Hb_000331_130 Hb_000144_060 Hb_000144_060 Hb_000363_060--Hb_000144_060 Hb_006569_040--Hb_010174_090 Hb_007283_010 Hb_007283_010 Hb_006569_040--Hb_007283_010 Hb_000826_030 Hb_000826_030 Hb_006569_040--Hb_000826_030 Hb_000663_020 Hb_000663_020 Hb_006569_040--Hb_000663_020 Hb_003752_070 Hb_003752_070 Hb_006569_040--Hb_003752_070 Hb_006787_090--Hb_000311_120 Hb_006787_090--Hb_010174_090 Hb_006787_090--Hb_003752_070 Hb_000284_130 Hb_000284_130 Hb_006787_090--Hb_000284_130 Hb_000613_120 Hb_000613_120 Hb_006787_090--Hb_000613_120 Hb_006787_090--Hb_000144_060 Hb_010174_090--Hb_000311_120 Hb_010174_090--Hb_000613_120 Hb_010174_090--Hb_000826_030 Hb_003376_390 Hb_003376_390 Hb_004871_010--Hb_003376_390 Hb_000260_710 Hb_000260_710 Hb_004871_010--Hb_000260_710 Hb_000976_190 Hb_000976_190 Hb_004871_010--Hb_000976_190 Hb_004871_010--Hb_006787_090 Hb_002928_030 Hb_002928_030 Hb_004871_010--Hb_002928_030 Hb_001959_060 Hb_001959_060 Hb_004871_010--Hb_001959_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.77753 9.96678 25.3249 7.00613 15.4344 8.06962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.05197 4.54758 2.47195 4.78187 34.6997

CAGE analysis