Hb_003529_140

Information

Type -
Description -
Location Contig3529: 139561-142727
Sequence    

Annotation

kegg
ID tcc:TCM_006222
description NIFU-like protein 2 isoform 1
nr
ID XP_012066647.1
description PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
swissprot
ID Q93W20
description NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2 PE=1 SV=1
trembl
ID A0A067LEA0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00216 PE=4 SV=1
Gene Ontology
ID GO:0005506
description nifu-like protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36646: 139602-142761
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003529_140 0.0 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
2 Hb_006569_040 0.0461419737 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
3 Hb_010174_090 0.0721261986 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
4 Hb_001828_120 0.0782181008 - - PREDICTED: uncharacterized protein LOC105140167 [Populus euphratica]
5 Hb_002600_070 0.086693412 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
6 Hb_000555_020 0.0914228987 - - APO protein 2, chloroplast precursor, putative [Ricinus communis]
7 Hb_000311_120 0.091450388 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
8 Hb_000826_030 0.0949266227 - - PREDICTED: putative tRNA pseudouridine synthase isoform X1 [Jatropha curcas]
9 Hb_007283_010 0.0987921309 - - PREDICTED: pre-mRNA-processing protein 40C isoform X1 [Jatropha curcas]
10 Hb_000771_170 0.0992426037 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
11 Hb_031042_060 0.099961595 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
12 Hb_005235_070 0.1009395544 - - PREDICTED: plastid lipid-associated protein 3, chloroplastic [Jatropha curcas]
13 Hb_000107_340 0.1009938925 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105637652 [Jatropha curcas]
14 Hb_001277_340 0.1034542971 - - aldo/keto reductase, putative [Ricinus communis]
15 Hb_003071_030 0.1043326903 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
16 Hb_114310_070 0.1054659397 - - GTP-dependent nucleic acid-binding protein engD, putative [Ricinus communis]
17 Hb_004884_180 0.1087494309 - - PREDICTED: protein TIC 56, chloroplastic [Jatropha curcas]
18 Hb_000260_710 0.1096477467 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
19 Hb_007012_030 0.1099575137 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 4-like isoform X1 [Jatropha curcas]
20 Hb_006787_090 0.1107683304 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]

Gene co-expression network

sample Hb_003529_140 Hb_003529_140 Hb_006569_040 Hb_006569_040 Hb_003529_140--Hb_006569_040 Hb_010174_090 Hb_010174_090 Hb_003529_140--Hb_010174_090 Hb_001828_120 Hb_001828_120 Hb_003529_140--Hb_001828_120 Hb_002600_070 Hb_002600_070 Hb_003529_140--Hb_002600_070 Hb_000555_020 Hb_000555_020 Hb_003529_140--Hb_000555_020 Hb_000311_120 Hb_000311_120 Hb_003529_140--Hb_000311_120 Hb_006569_040--Hb_010174_090 Hb_007283_010 Hb_007283_010 Hb_006569_040--Hb_007283_010 Hb_000826_030 Hb_000826_030 Hb_006569_040--Hb_000826_030 Hb_000663_020 Hb_000663_020 Hb_006569_040--Hb_000663_020 Hb_003752_070 Hb_003752_070 Hb_006569_040--Hb_003752_070 Hb_010174_090--Hb_000311_120 Hb_000613_120 Hb_000613_120 Hb_010174_090--Hb_000613_120 Hb_006787_090 Hb_006787_090 Hb_010174_090--Hb_006787_090 Hb_010174_090--Hb_000826_030 Hb_000771_170 Hb_000771_170 Hb_001828_120--Hb_000771_170 Hb_005883_020 Hb_005883_020 Hb_001828_120--Hb_005883_020 Hb_001828_120--Hb_002600_070 Hb_007192_090 Hb_007192_090 Hb_001828_120--Hb_007192_090 Hb_002249_030 Hb_002249_030 Hb_001828_120--Hb_002249_030 Hb_000748_090 Hb_000748_090 Hb_002600_070--Hb_000748_090 Hb_007012_030 Hb_007012_030 Hb_002600_070--Hb_007012_030 Hb_002600_070--Hb_000771_170 Hb_001277_340 Hb_001277_340 Hb_002600_070--Hb_001277_340 Hb_000482_050 Hb_000482_050 Hb_002600_070--Hb_000482_050 Hb_009158_060 Hb_009158_060 Hb_002600_070--Hb_009158_060 Hb_000107_340 Hb_000107_340 Hb_000555_020--Hb_000107_340 Hb_005235_070 Hb_005235_070 Hb_000555_020--Hb_005235_070 Hb_002150_140 Hb_002150_140 Hb_000555_020--Hb_002150_140 Hb_102948_010 Hb_102948_010 Hb_000555_020--Hb_102948_010 Hb_114310_070 Hb_114310_070 Hb_000555_020--Hb_114310_070 Hb_000555_020--Hb_000311_120 Hb_000311_120--Hb_006787_090 Hb_000580_150 Hb_000580_150 Hb_000311_120--Hb_000580_150 Hb_033312_010 Hb_033312_010 Hb_000311_120--Hb_033312_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.39488 17.4152 28.7703 9.44342 12.2373 9.32203
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.04205 8.69857 3.63938 8.33068 30.9194

CAGE analysis