Hb_000107_340

Information

Type transcription factor
Description TF Family: mTERF
Location Contig107: 245606-246592
Sequence    

Annotation

kegg
ID rcu:RCOM_1563910
description hypothetical protein
nr
ID XP_012076631.1
description PREDICTED: uncharacterized protein LOC105637652 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LEZ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10773 PE=4 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial transcription termination factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02177: 244984-246733
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_340 0.0 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105637652 [Jatropha curcas]
2 Hb_000555_020 0.0595826143 - - APO protein 2, chloroplast precursor, putative [Ricinus communis]
3 Hb_005235_070 0.0754020479 - - PREDICTED: plastid lipid-associated protein 3, chloroplastic [Jatropha curcas]
4 Hb_000035_090 0.0905011839 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
5 Hb_102948_010 0.0906362205 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
6 Hb_003747_120 0.0925507061 - - PREDICTED: OTU domain-containing protein DDB_G0284757 isoform X1 [Jatropha curcas]
7 Hb_022378_010 0.0969583103 - - PREDICTED: uncharacterized protein LOC105634715 isoform X1 [Jatropha curcas]
8 Hb_002435_100 0.0980550201 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Jatropha curcas]
9 Hb_000673_010 0.0988930078 - - PREDICTED: uncharacterized protein LOC105636554 isoform X1 [Jatropha curcas]
10 Hb_114310_070 0.0993687151 - - GTP-dependent nucleic acid-binding protein engD, putative [Ricinus communis]
11 Hb_002600_070 0.0997040779 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
12 Hb_000069_610 0.1005266453 - - PREDICTED: protein SUPPRESSOR OF PHYA-105 1 [Jatropha curcas]
13 Hb_003529_140 0.1009938925 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
14 Hb_000748_090 0.1016852269 - - glucose inhibited division protein A, putative [Ricinus communis]
15 Hb_002876_300 0.1018929752 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
16 Hb_000208_190 0.1021051982 - - PREDICTED: uncharacterized protein LOC105648580 [Jatropha curcas]
17 Hb_000788_030 0.1037374889 - - PREDICTED: dynamin-2A [Jatropha curcas]
18 Hb_003417_040 0.1043376297 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]
19 Hb_002107_050 0.104338583 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
20 Hb_000589_110 0.1043606368 - - PREDICTED: uncharacterized protein LOC105647614 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000107_340 Hb_000107_340 Hb_000555_020 Hb_000555_020 Hb_000107_340--Hb_000555_020 Hb_005235_070 Hb_005235_070 Hb_000107_340--Hb_005235_070 Hb_000035_090 Hb_000035_090 Hb_000107_340--Hb_000035_090 Hb_102948_010 Hb_102948_010 Hb_000107_340--Hb_102948_010 Hb_003747_120 Hb_003747_120 Hb_000107_340--Hb_003747_120 Hb_022378_010 Hb_022378_010 Hb_000107_340--Hb_022378_010 Hb_000555_020--Hb_005235_070 Hb_002150_140 Hb_002150_140 Hb_000555_020--Hb_002150_140 Hb_000555_020--Hb_102948_010 Hb_114310_070 Hb_114310_070 Hb_000555_020--Hb_114310_070 Hb_000311_120 Hb_000311_120 Hb_000555_020--Hb_000311_120 Hb_003883_010 Hb_003883_010 Hb_005235_070--Hb_003883_010 Hb_005235_070--Hb_102948_010 Hb_002218_020 Hb_002218_020 Hb_005235_070--Hb_002218_020 Hb_002107_050 Hb_002107_050 Hb_005235_070--Hb_002107_050 Hb_073973_090 Hb_073973_090 Hb_000035_090--Hb_073973_090 Hb_000375_390 Hb_000375_390 Hb_000035_090--Hb_000375_390 Hb_002876_300 Hb_002876_300 Hb_000035_090--Hb_002876_300 Hb_002435_100 Hb_002435_100 Hb_000035_090--Hb_002435_100 Hb_003098_070 Hb_003098_070 Hb_000035_090--Hb_003098_070 Hb_000169_020 Hb_000169_020 Hb_000035_090--Hb_000169_020 Hb_102948_010--Hb_002218_020 Hb_001430_020 Hb_001430_020 Hb_102948_010--Hb_001430_020 Hb_087313_010 Hb_087313_010 Hb_102948_010--Hb_087313_010 Hb_012438_030 Hb_012438_030 Hb_102948_010--Hb_012438_030 Hb_000111_170 Hb_000111_170 Hb_003747_120--Hb_000111_170 Hb_007283_010 Hb_007283_010 Hb_003747_120--Hb_007283_010 Hb_000085_210 Hb_000085_210 Hb_003747_120--Hb_000085_210 Hb_004631_150 Hb_004631_150 Hb_003747_120--Hb_004631_150 Hb_008059_010 Hb_008059_010 Hb_003747_120--Hb_008059_010 Hb_031284_010 Hb_031284_010 Hb_003747_120--Hb_031284_010 Hb_000208_190 Hb_000208_190 Hb_022378_010--Hb_000208_190 Hb_068804_090 Hb_068804_090 Hb_022378_010--Hb_068804_090 Hb_004375_050 Hb_004375_050 Hb_022378_010--Hb_004375_050 Hb_000340_040 Hb_000340_040 Hb_022378_010--Hb_000340_040 Hb_005511_140 Hb_005511_140 Hb_022378_010--Hb_005511_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.56875 22.2162 31.4426 17.2021 14.7047 12.1434
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.24162 16.6504 9.6854 8.36035 36.7628

CAGE analysis