Hb_006569_040

Information

Type transcription factor
Description TF Family: GNAT
Location Contig6569: 40616-46209
Sequence    

Annotation

kegg
ID pop:POPTR_0008s03920g
description POPTRDRAFT_1084283; hypothetical protein
nr
ID XP_012093259.1
description PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L7D8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20046 PE=4 SV=1
Gene Ontology
ID GO:0008080
description acyl- n-acyltransferases superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52766: 40700-46133
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006569_040 0.0 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
2 Hb_003529_140 0.0461419737 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
3 Hb_010174_090 0.0762230348 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
4 Hb_007283_010 0.090744845 - - PREDICTED: pre-mRNA-processing protein 40C isoform X1 [Jatropha curcas]
5 Hb_000826_030 0.0945329856 - - PREDICTED: putative tRNA pseudouridine synthase isoform X1 [Jatropha curcas]
6 Hb_000663_020 0.0960870089 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
7 Hb_003752_070 0.0970135439 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
8 Hb_000555_020 0.0990604195 - - APO protein 2, chloroplast precursor, putative [Ricinus communis]
9 Hb_000311_120 0.0993253435 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
10 Hb_000532_100 0.1003669591 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
11 Hb_002218_020 0.1021860536 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
12 Hb_001195_270 0.1027057499 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
13 Hb_031042_060 0.1030425591 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
14 Hb_005235_070 0.103551628 - - PREDICTED: plastid lipid-associated protein 3, chloroplastic [Jatropha curcas]
15 Hb_001828_120 0.1036067183 - - PREDICTED: uncharacterized protein LOC105140167 [Populus euphratica]
16 Hb_102948_010 0.1041599761 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
17 Hb_003225_020 0.1072202763 transcription factor TF Family: HB PREDICTED: homeobox protein HAT3.1 [Jatropha curcas]
18 Hb_000107_340 0.1090751814 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105637652 [Jatropha curcas]
19 Hb_002600_070 0.1095158219 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
20 Hb_001930_030 0.1095164241 - - PREDICTED: 30S ribosomal protein S10, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_006569_040 Hb_006569_040 Hb_003529_140 Hb_003529_140 Hb_006569_040--Hb_003529_140 Hb_010174_090 Hb_010174_090 Hb_006569_040--Hb_010174_090 Hb_007283_010 Hb_007283_010 Hb_006569_040--Hb_007283_010 Hb_000826_030 Hb_000826_030 Hb_006569_040--Hb_000826_030 Hb_000663_020 Hb_000663_020 Hb_006569_040--Hb_000663_020 Hb_003752_070 Hb_003752_070 Hb_006569_040--Hb_003752_070 Hb_003529_140--Hb_010174_090 Hb_001828_120 Hb_001828_120 Hb_003529_140--Hb_001828_120 Hb_002600_070 Hb_002600_070 Hb_003529_140--Hb_002600_070 Hb_000555_020 Hb_000555_020 Hb_003529_140--Hb_000555_020 Hb_000311_120 Hb_000311_120 Hb_003529_140--Hb_000311_120 Hb_010174_090--Hb_000311_120 Hb_000613_120 Hb_000613_120 Hb_010174_090--Hb_000613_120 Hb_006787_090 Hb_006787_090 Hb_010174_090--Hb_006787_090 Hb_010174_090--Hb_000826_030 Hb_005288_070 Hb_005288_070 Hb_007283_010--Hb_005288_070 Hb_000457_230 Hb_000457_230 Hb_007283_010--Hb_000457_230 Hb_030414_040 Hb_030414_040 Hb_007283_010--Hb_030414_040 Hb_004324_330 Hb_004324_330 Hb_007283_010--Hb_004324_330 Hb_031284_010 Hb_031284_010 Hb_007283_010--Hb_031284_010 Hb_000205_260 Hb_000205_260 Hb_007283_010--Hb_000205_260 Hb_001158_160 Hb_001158_160 Hb_000826_030--Hb_001158_160 Hb_002876_300 Hb_002876_300 Hb_000826_030--Hb_002876_300 Hb_000826_030--Hb_030414_040 Hb_012438_030 Hb_012438_030 Hb_000826_030--Hb_012438_030 Hb_000364_100 Hb_000364_100 Hb_000826_030--Hb_000364_100 Hb_005731_110 Hb_005731_110 Hb_000663_020--Hb_005731_110 Hb_002218_020 Hb_002218_020 Hb_000663_020--Hb_002218_020 Hb_001195_270 Hb_001195_270 Hb_000663_020--Hb_001195_270 Hb_077026_010 Hb_077026_010 Hb_000663_020--Hb_077026_010 Hb_005162_110 Hb_005162_110 Hb_000663_020--Hb_005162_110 Hb_003506_030 Hb_003506_030 Hb_000663_020--Hb_003506_030 Hb_021650_010 Hb_021650_010 Hb_003752_070--Hb_021650_010 Hb_003752_070--Hb_001195_270 Hb_003752_070--Hb_006787_090 Hb_003752_070--Hb_005162_110 Hb_000051_060 Hb_000051_060 Hb_003752_070--Hb_000051_060 Hb_003752_070--Hb_010174_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.602 16.1393 30.3127 9.7394 14.1217 9.19217
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.76167 8.93813 3.67336 6.79804 26.3485

CAGE analysis